SGN Marker T1391
SGN-M1973
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 99
Tomato EST read: TPTAR37TH
Arabidopsis best BAC match: AP000372.1
Arabidopsis position: 5.1750000
Arabidopsis identities: 0.695
Best GenBank protein hit: BAA98190.1
Evalue: 2.6e-54
Identities: 0.651
Description: regulator of chromosome condensation (cell cycle regulatory protein) like [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TPTAR37TH
Arabidopsis best BAC match: AP000372.1
Arabidopsis position: 5.1750000
Arabidopsis identities: 0.695
Best GenBank protein hit: BAA98190.1
Evalue: 2.6e-54
Identities: 0.651
Description: regulator of chromosome condensation (cell cycle regulatory protein) like [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato - Kazusa and SolCAP markers mapped to genome |
| ![]() Kazusa F2-2000 genetic map |
| ![]() Eggplant-COSII |
| ![]() Tomato-EXPEN 2000 |
| ![]() Eggplant-LXM 2002 |
Overgo hybridization and physical mapping |
T1391 was used as an overgo probe on plate 15 [well G3]
Plausible BAC Matches: None
Non-Plausible BAC matches
Overgo Sequences
A sequence
ATTGGTATGGGATCCGACGCTTAC
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B sequence
GTATAGGAGTAGGCTCGTAAGCGT
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AB sequence
ATTGGTATGGGATCCGACGCTTACGAGCCT
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Marker sequence
GGATGCTCCGGTTACTGAAGCACGGGAGAACTCCGGCGGAACGCCTTTCC
CGCCGATGGATGAGCAGCGGCAGTCATAGCAAAACAACGGTGATGAGCTT CGGTGACGGAAGCCACGGAGCTTTGGGCCTTCCGTCGTCCATCATTGGTA TGGGATCCGACGCTTACGAGCCTACTCCTATACCCGGTCTCCCGCCTGAC GTCGTTACCGTCGCCGCCGGTCACTTCCACTCCCTCGCCGTTACTTCTGA GGGACATGTTTGGGCTTGGGGACGTAATAATGAAGGCCAGCTTGGCCGTG ATCCCCTTTCTCCCAGAGAAACGTGGAATGAACCAAAAAGAGTAGAAGGA CTACATAAAGTACGAGTTCAAACCGCATTTGCATCAGGTGTCATTTCTGC CGCCATAGGAGATGATGGATCTCTATGGGTTTGGGGAAGTTCTAAGCGTG GGCAGCTTGGTCTTGGCAAGGGAATCACCAACACTGCATTACCTTCGAAA ATTGAAACACTTTCTGGAGAA |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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