SGN Marker T1413
SGN-M1987
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
| Synonyms |
| Locus associations |
| COS information |
MIPS Category: 99
Tomato EST read: TPTAS27TH
Arabidopsis best BAC match: AC002521.2
Arabidopsis position: 2.0110000
Arabidopsis identities: 0.711
Best GenBank protein hit: AAC05351.1
Evalue: 6.4e-49
Identities: 0.513
Description: putative receptor-like protein kinase [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TPTAS27TH
Arabidopsis best BAC match: AC002521.2
Arabidopsis position: 2.0110000
Arabidopsis identities: 0.711
Best GenBank protein hit: AAC05351.1
Evalue: 6.4e-49
Identities: 0.513
Description: putative receptor-like protein kinase [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
 Mapped locations
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Mapped locations
|  Tomato-EXPEN 2000 |
| Overgo hybridization and physical mapping |
T1413 was used as an overgo probe on plate 3 [well H6]
Plausible BAC Matches: P250H05, P017B19, P179P22, P002N12, P271G02, P027O17, P190A14, P200K19, P242C01, P032H01, P093K10, P299F16, P179M04, P282P11, P093C04
Overgo Sequences
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A sequence
TACTGACTGTGCTGGTACATGACG
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B sequence
CTGCCTGTTGATTCACCGTCATGT
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AB sequence
TACTGACTGTGCTGGTACATGACGGTGAAT
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Marker sequence
GGCGATACGAGAGGAGAGGGATATACAAATTAGTTTGTTGAATTATAGGA
AGGATGGGACACCATTTTGGATGTTGTTTCATATGTGTCCTGTTTTCGAT GAGAAGGACGGGAGAGTGATTCATTTCTTGGGAGTTCAAGTTCCAATTTT TAGGAGGCCTAAGCCATCTGGAGTTGGACTAAATTTATGCCAAGATGTAG CTGGCTGTCGAGAGTCGGTGCTTAGGTGTTATAGAAGGGAAGTTCACTCC ATGAGCGTGGAACGGGCACTGTCTCTTGTATCAGGTTCAGGCTTGGATTT CACAGGAATAGATGTAGAGGGGCCGTGTGATGCAAATGATCTAGAGAAGA GAAAAGCCACTGCTGTTATAAACAACATACTGACTGTGCTGGTACATGAC GGTGAATCAACAGGCAGACTAGTCAATGGAAAGAGACATTCTCAACCTGN GACGGGTCTGCTCGGAGCATCCTTAAATATATCTCTTGGTAGAATCAAAC AAAGCTTTGTATTAACTGATGCTAACTTACCTGACATGCCAATTGTCTTT GCAAGCGATAACTTTCTGAAATTAACAGGCTTTTCAAAAAATGAAGTGTT GGGCTATAACTGTAGATCTTTTAGTGGGAC |
| Related Markers
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
| Genomic location of T1413
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| User comments |
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