SGN Marker T1483
SGN-M2035
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 6.13.01
Tomato EST read: TPTAV76TH
Arabidopsis best BAC match: AB025624.1
Arabidopsis position: 3.0540000
Arabidopsis identities: 0.613
Best GenBank protein hit: AAD48496.1
Evalue: 4e-108
Identities: 0.981
Description: cysteine protease TDI-65 [Lycopersicon esculentum]
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TPTAV76TH
Arabidopsis best BAC match: AB025624.1
Arabidopsis position: 3.0540000
Arabidopsis identities: 0.613
Best GenBank protein hit: AAD48496.1
Evalue: 4e-108
Identities: 0.981
Description: cysteine protease TDI-65 [Lycopersicon esculentum]
Comment:
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato - Kazusa and SolCAP markers mapped to genome |
| ![]() Kazusa F2-2000 genetic map |
| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T1483 was used as an overgo probe on plate 4 [well A10]
Plausible BAC Matches: None
Overgo Sequences
A sequence
CTACGACGAGACACATATTCACCG
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B sequence
TTCATCGTCGGTACGACGGTGAAT
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AB sequence
CTACGACGAGACACATATTCACCGTCGTAC
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Marker sequence
TAATATCAACCAATCATGGCAGCTCACAGCTCAACTCTCACCATATCCAT
ACTTCTCATGCTCATCTTCTCCACTTTATCCTCTGCTTCCGATATGTCAA TTATTAGCTACGACGAGACACATATTCACCGTCGTACCGACGATGAAGTC TCGGCGTTGTACGAGTCCTGGCTAATCGAGCACGGAAAATCGTACAACGC CTTAGGAGAAAAGGATAAGAGATTTCAGATCTTCAAGGATAACTTGAAAT ACATAGACGAACAGAACTCTGTTCCGAATCAGAGTTATAAGCTCGGATTG ACGAAATTCGCCGATCTGACTAATGAGGAATACAGGTCGATTTACTTGGG AACGAAGAGTTCCGGTGACCGGAAAAAGTTATCGAAGAACAAAAGTGATC GGTATCTTCCTAAAGTTGGGGATAGCTTGCCGGAATCAATTGACTGGAGA GAAAAAGGTGTGCTTGTTGGTGTCAAGGATCAAGGAAGCTGTGGGAGTTG TTGGGCATTCTCTGCTGTTGCTGCCATGGAATCAATAAACGCGATAGTCA CTGAGAATTTGATATCACTATCAGAGCAAGAGTTGGTGGATTGTGATAAG TCGTACAATGAAAGTTGCGATGGTGGTCTTATGGACTACGCCTTTGAATT CGTCATCAAGAATGG |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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