SGN Marker T1504
SGN-M2052
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 99
Tomato EST read: TPTAX17TH
Arabidopsis best BAC match: AC007209.5
Arabidopsis position: 2.0750000
Arabidopsis identities: 0.767
Best GenBank protein hit: AAD28668.1
Evalue: 1.4e-54
Identities: 0.652
Description: SNF2 family (CHD1 subfamily) chromodomain protein [Arabidopsis thaliana]
Comment: no experimental data
More information about COS markers can be found on the COS markers page.
Tomato EST read: TPTAX17TH
Arabidopsis best BAC match: AC007209.5
Arabidopsis position: 2.0750000
Arabidopsis identities: 0.767
Best GenBank protein hit: AAD28668.1
Evalue: 1.4e-54
Identities: 0.652
Description: SNF2 family (CHD1 subfamily) chromodomain protein [Arabidopsis thaliana]
Comment: no experimental data
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T1504 was used as an overgo probe on plate 4 [well A4]
Plausible BAC Matches: P147G13
Overgo Sequences
A sequence
GGGAGATTTTAGCTGCACACTTCC
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B sequence
AGCACCATCAATTGCCGGAAGTGT
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AB sequence
GGGAGATTTTAGCTGCACACTTCCGGCAAT
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Marker sequence
GCTATCCCGCTGGTGGTTACTAATAAAAGGAAGAAGGGTGGTGATGCTCA
GGAAAGGTTCCCAAAGCGTCGCAAGGGAGATTTTAGCTGCACACTTCCGG CAATTGATGGTGCTTCCGCTCAAGTGAGAGGATGGTCTTTTGGGAACTTG TCAAAAAGAGACGCCACACGTTTTTCTCGTGAGGTCAAGAAGTTTGGGAA TGATAGCCAAATTGACTTAATATCATCAGAGGTTGGTGGGGCAGTTGAAG CTGCACCAACTGAAGCTCAAGTTGAGCTTTTTGACTCATTGATTGATGGC TGTAGAGAAGCAGTTAAAGGTGAAGTTGTTGATCCAAAGGGACCTCTTTT AGATTTTTTTGGTGTTCCCGTGAAGGCTGATGAACTATTGGGCCGTGTTG AGGAACTTCAACTCCTAGCAAAGCGCATTTCTCGATATGCGGATCCTGTC TCACAGTTCCGTGCTTTGGCTTATCTAAAGCCTGCAACTTGGTCTAAAGG TTGT |
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User comments |
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