SGN Marker T1511
SGN-M2056
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 5.04
Tomato EST read: TPTAY18TH
Arabidopsis best BAC match: AL080253.2
Arabidopsis position: 4.1060000
Arabidopsis identities: 0.818
Best GenBank protein hit: BAA01974.1
Evalue: 9.9e-62
Identities: 0.928
Description: chloroplast elongation factor TuA (EF-TuA) [Nicotiana sylvestris]
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TPTAY18TH
Arabidopsis best BAC match: AL080253.2
Arabidopsis position: 4.1060000
Arabidopsis identities: 0.818
Best GenBank protein hit: BAA01974.1
Evalue: 9.9e-62
Identities: 0.928
Description: chloroplast elongation factor TuA (EF-TuA) [Nicotiana sylvestris]
Comment:
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato - Kazusa and SolCAP markers mapped to genome |
| ![]() Kazusa F2-2000 genetic map |
| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T1511 was used as an overgo probe on plate 6 [well G2]
Plausible BAC Matches: P162N06, P168H20, P040F22, P066E05, P319F04, P007M07, P147J04, P012I12, P331I14, P330A12, P110C16, P306O19, P119H12, P067H05, P144J16
Overgo Sequences
A sequence
CCATGGAAAGACTACCCTTACTGC
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B sequence
CGCCATGGTTAAAGCAGCAGTAAG
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AB sequence
CCATGGAAAGACTACCCTTACTGCTGCTTT
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Marker sequence
GCTCACTCTTATCCTTCTCCGCCATGGCTTCAATTTCAGCAGCGGCTGCC
ACCGCCACTTCTTCTCCTAAGCTCCTAAACCCTTCTAATCCCCTTCTTCC TTGCGCTGCTAAACCATCTAAGCTTATCCTATCCTCTTCATTTACCCCCA ACTTTTCTACCCTTCTCCTACACTCACCCGCCGCTACTTCTCCCACCACC CACCACCAACGCCGCTTCACTGTCCGTGCTGCCCGTGGCAAATTCGAGAG GAAGAAACCCCATGTCAATATTGGTACTATTGGTCATGTTGACCATGGAA AGACTACCCTTACTGCTGCTTTAACCATGGCGCTTGCTTCTATGGGTAAT TCCGCTCCCAAGAAGTATGATGAAATTGATGCCGCCCCAGAAGAGCGTGC TCGTGGGATTACTATTAATACGGCTACGGTTGAGTATGAGACTGAGAACC GACACTATGCCCACGTGGACTGCCCCGGTCACGCTGATTATGTCAAGAAC ATGATTACTGGTGCTGCC |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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