SGN Marker T1518
SGN-M2062
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 4.05.01.04
Tomato EST read: TPTAY78TH
Arabidopsis best BAC match: AB013392.1
Arabidopsis position: 5.2360000
Arabidopsis identities: 0.488
Best GenBank protein hit: CAA66483.1
Evalue: 2.7e-39
Identities: 0.568
Description: transcription factor [Vicia faba]
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TPTAY78TH
Arabidopsis best BAC match: AB013392.1
Arabidopsis position: 5.2360000
Arabidopsis identities: 0.488
Best GenBank protein hit: CAA66483.1
Evalue: 2.7e-39
Identities: 0.568
Description: transcription factor [Vicia faba]
Comment:
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato - Kazusa and SolCAP markers mapped to genome |
| ![]() Kazusa F2-2000 genetic map |
| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T1518 was used as an overgo probe on plate 8 [well F2]
Plausible BAC Matches: P034K10, P276F04
Overgo Sequences
A sequence
TGAGTGCAGCTGAAGAGCTCAATG
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B sequence
ATTTGTCAGCAGCTCCCATTGAGC
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AB sequence
TGAGTGCAGCTGAAGAGCTCAATGGGAGCT
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Marker sequence
GTGGAAATAGGAGAGGAAAAAAAGCGGAAATACCAGTGAGTGCAGCTGAA
GAGCTCAATGGGAGCTGCTGACAAATCCTTCACCCGTCGGCTCAGACGAG AAGACTGTAAACGCACAAAACATGATTCCTCCTTCTCCCACTGGAAGATT CTGGTTGGGCCTAATGATTGGGAGGATTATTTATTGGGAAAGGAAGGAAC AGAGAGATATAGGACTCAGAACCTGCCAAACTGCACCTCCTGCTCTGGAG GTTATGAACTGGGAATAGCTGTGTCACGACGAAAAGCTGGGCGAGAGGCT ACCAGACTTGACCCTGATTATATTGTTCCTGTATATGTTGGAAAATCGAA TAATGTTAGAACTAGACTGCAGCAATATGGACGTGTAGGTGCTCATTTAG AGAATGACTATTCCAATAGCGAGCTGCACGCTGGTGAAATAATATCTGGT CCAAAGAGAGCTGGATTATTTACAGAAACATTTTCAAGAGGCTTCTCTAT TGTTTATAGGTGGGCACCTATGAATGACAATAAAGATGCTGAGAGAACTG |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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