SGN Marker T1535
SGN-M2075
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
| Synonyms |
| Locus associations |
| COS information |
MIPS Category: 1.06.1.05
Tomato EST read: TPTBA07TH
Arabidopsis best BAC match: AC011915.3
Arabidopsis position: 1.1334000
Arabidopsis identities: 0.754
Best GenBank protein hit: AAF16606.1
Evalue: 4.7e-45
Identities: 0.754
Description: very-long-chain fatty acid condensing enzyme (CUT1); [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TPTBA07TH
Arabidopsis best BAC match: AC011915.3
Arabidopsis position: 1.1334000
Arabidopsis identities: 0.754
Best GenBank protein hit: AAF16606.1
Evalue: 4.7e-45
Identities: 0.754
Description: very-long-chain fatty acid condensing enzyme (CUT1); [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
 Mapped locations
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Mapped locations
|  Tomato-EXPEN 2000 |
| Overgo hybridization and physical mapping |
T1535 was used as an overgo probe on plate 11 [well D5]
Plausible BAC Matches: P265D03, P212J15, P033E18, P164H08
Overgo Sequences
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A sequence
TGGCTGCTCTTGTTATTCAGGTAC
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B sequence
TCAGGGCCTAATTTTAGTACCTGA
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AB sequence
TGGCTGCTCTTGTTATTCAGGTACTAAAAT
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Marker sequence
TCTAACTCTGTTAAGCTGAAATATGTGAAACTTGGTTACCAATACCTTGT
TAATAATTTTCTTACTTTCTTGATTGTTCCCATAATGGCTGCTCTTGTTA TTCAGGTACTAAAATTAGGCCCTGAAGAGATTGTAAGTATTTGGAATTCA CTTCACTTTGATCTCCTCCAAATCCTCTGTTCTTCTTTTCTCATCATTTT CATAGCCACAGTTTACTTCATGTCAAAACCAAGATCCATTTACTTAGTAG ATTACTCATGTTACAAAGCCCCCGTTACGGGCAGAGTACCCTTTTCAACT TTCATGGAACATTCGCGGT |
| Genomic location of T1535
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| User comments |
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