SGN Marker T1541
SGN-M2080
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 98
Tomato EST read: TPTBA93TH
Arabidopsis best BAC match: Z97341.2
Arabidopsis position: 4.0900000
Arabidopsis identities: 0.666
Best GenBank protein hit: CAA07370.1
Evalue: 1.2e-24
Identities: 0.816
Description: proline-rich protein [Capsicum annuum]
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TPTBA93TH
Arabidopsis best BAC match: Z97341.2
Arabidopsis position: 4.0900000
Arabidopsis identities: 0.666
Best GenBank protein hit: CAA07370.1
Evalue: 1.2e-24
Identities: 0.816
Description: proline-rich protein [Capsicum annuum]
Comment:
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T1541 was used as an overgo probe on plate 11 [well F8]
Plausible BAC Matches: P171M23, P198C19, P146F07, P026N03, P101L08, P040C21, P099F09, P076O15, P168B11, P274P10, P064N12, P161C23
Overgo Sequences
A sequence
CCTAAAGTAGTGGTCGTGGAGAAG
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B sequence
TCTCCGGTTCTTTAGGCTTCTCCA
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AB sequence
CCTAAAGTAGTGGTCGTGGAGAAGCCTAAA
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Marker sequence
CTATAGATTATTTTATCACTTTCAAATATCAAAATTCTTAGTTCTCAACT
ATGGGTGGTGACAATACTGAGAAGATTACCATAATGATGCTAAAGGTTGA TCTTCAATGTTCAAGCTGCTACAAACAAGTCAAAAAAATTCTCTGCAAAT TCCCTCAAATTCGAGACCAAGTGTATGATGAAAAGGCCAATATTATCACA ATTACTGTATTGTGTTGCAATCCTGAAAAAATTCGTGACAAATTGTGTTG CAAAGGAGGGGGAGTAATCAAGAGCATTGAGATCAAAGAGTCTCAAAAGC CTAAAGAACCGGAAAAGCCCAAAAAGCCTGAAAAGCCCGAGAAATCGAAA GTGGTGGTGGTGGAGAAGCCTAAAGAGCCCGAAAAACCTAAAGTAGTGGT CGTGGAGAAGCCTAAAGAACCGGAGAAACCCAAAGTGGTGGTTGCAGAGA AGCCTAAAGAATCAG |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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