SGN Marker T1555
SGN-M2092
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 98
Tomato EST read: TPTBB82TH
Arabidopsis best BAC match: AB013389.1
Arabidopsis position: 5.2970000
Arabidopsis identities: 0.704
Best GenBank protein hit: BAB10929.1
Evalue: 5.1e-48
Identities: 0.687
Description: apospory-associated protein C-like [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TPTBB82TH
Arabidopsis best BAC match: AB013389.1
Arabidopsis position: 5.2970000
Arabidopsis identities: 0.704
Best GenBank protein hit: BAB10929.1
Evalue: 5.1e-48
Identities: 0.687
Description: apospory-associated protein C-like [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T1555 was used as an overgo probe on plate 11 [well F7]
Plausible BAC Matches: P005O22, P213A01, P019I01, P030A21
Overgo Sequences
A sequence
GATGGCAGCATTGTCTATGACCTG
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B sequence
TAAGGGAGAGCAAGACCAGGTCAT
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AB sequence
GATGGCAGCATTGTCTATGACCTGGTCTTG
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Marker sequence
GACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGG
CAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTT CGGCGAGTCAATCGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTAC TGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAA GTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTA GACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCA GAAACCAATCAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTG GCCCAATCCAGCAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTT AGCTCTGAAAGTGTGGAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGA TGGGCCTTATAGCCGAGCAATGTGGGATTATAGCTTCCATGCTCTTTACA AGATCACTCTTGATAAGAAGACCCTGTCAACGGAAC |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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