SGN Marker T1564
SGN-M2099
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 5.04
Tomato EST read: TPTBC34TH
Arabidopsis best BAC match: AL132958.1
Arabidopsis position: 3.1183000
Arabidopsis identities: 0.794
Best GenBank protein hit: CAB64214.1
Evalue: 5.4e-70
Identities: 0.638
Description: RNA helicase-like protein [Arabidopsis thaliana]
Comment: similarity to yeast RNA helicase
More information about COS markers can be found on the COS markers page.
Tomato EST read: TPTBC34TH
Arabidopsis best BAC match: AL132958.1
Arabidopsis position: 3.1183000
Arabidopsis identities: 0.794
Best GenBank protein hit: CAB64214.1
Evalue: 5.4e-70
Identities: 0.638
Description: RNA helicase-like protein [Arabidopsis thaliana]
Comment: similarity to yeast RNA helicase
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T1564 was used as an overgo probe on plate 7 [well D1]
Plausible BAC Matches: None
Overgo Sequences
A sequence
GATCGATCAAGCTGAGCAGTCTTC
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B sequence
GTCCTCATTAGAAGCGGAAGACTG
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AB sequence
GATCGATCAAGCTGAGCAGTCTTCCGCTTC
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Marker sequence
GGCCGCTTCTACGACAGCAAACCCACCCGAATCCAAAAGTTGGGCAGACC
AAGCCGACGAGATCGATCAAGCTGAGCAGTCTTCCGCTTCTAATGAGGAC GCTGCTGCCGAGATAAATATCGGATCTCTACAAGTCGATGAGTCCAAAAG AGACAACTCCACTCTCTCTGATCCGGAAGATTCCAGCATAGAAGCGGTTA CGTCTGGCGATACTATGTACAAATCAGCGAAGAGATTTGAGGATTTGAAC TTATCTCCTGAGCTATTGAAGGGATTATATGTACAAATGCAGTTTGAGCG TCCTAGCAAGATTCAGGAAATTAGTTTGCCTATGATTCTTACGCCTCCGT ACAAGAATCTTATTGCTCAGGCTCATAACGGTTCTGGTAAAACTACTTGC TTTGTGCTTGGGATGTTGAGTCGAATTGATCCAAAGCTTGCTGCCCCTCA AGCTCTCTGTATCTGTCCAACCAGAGAATTGGCTATTCAGAATATGGAAG TGCTATTGAAGATGGTGAAGTTCACTGGCATAACATCAGAGTTAGGTATC CCAGCAGATTCTGCCAACTATATTCCAATCTCAAAACGTCCGCCTGTTAC GGCACAAGTAGTGATTGGCACACCTGGGACTATAAACAAGTGGGTGAC |
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User comments |
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