SGN Marker T1600
SGN-M2121
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 2.01
Tomato EST read: TPTBN31TH
Arabidopsis best BAC match: AL035356.1
Arabidopsis position: 4.1250000
Arabidopsis identities: 0.666
Best GenBank protein hit: CAA03982.1
Evalue: 8.3e-83
Identities: 0.847
Description: glucose-6-phosphate isomerase [Spinacia oleracea]
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TPTBN31TH
Arabidopsis best BAC match: AL035356.1
Arabidopsis position: 4.1250000
Arabidopsis identities: 0.666
Best GenBank protein hit: CAA03982.1
Evalue: 8.3e-83
Identities: 0.847
Description: glucose-6-phosphate isomerase [Spinacia oleracea]
Comment:
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T1600 was used as an overgo probe on plate 8 [well B4]
Plausible BAC Matches: None
Overgo Sequences
A sequence
GGGTCACTATTGGTTGAGAAGTCC
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B sequence
GTTGGGAGCAAGATGAGGACTTCT
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AB sequence
GGGTCACTATTGGTTGAGAAGTCCTCATCT
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Marker sequence
GATATGGTGGATTTGGAGAAGGGGGCTATTGCAAACCCTGATGAGGGTAG
AATGGTGGGTCACTATTGGTTGAGAAGTCCTCATCTTGCTCCCAACTCAT TTCTCAGGTTGCAGATTGAGAATACTCTTGAAGCTGTTTGTGAGTTTGCA AATGATGTCGTCAGTGGTAAGGTCAAGACTCCTTCTGGAGGCCGATTTAC GCAAATTCTCTCTGTTGGAATTGGTGGTTCAGCTCTTGGACCACAATTTG TGGCTGAGGCATTGGCACCTGACAACCCTCCTCTGAAGATAAGATTTATC GACAATACAGATCCTGCAGGCATTGATCATCAAATTGCGCAACTTGGCCC TGAGCTGGCTTCAACACTTGTTATTGTTATTTCAAAGAGTGGAGGCACTC CAGAAACCCGAAATGGCTTGCTAGAAGTTCAGAAGGCCTTCCGTGAAGCT GGCCTGATATTCGCAAAACAGGGTGTTGCCATTACACAAGAAAACTCATT GCTTGACAACACTGCTAGAATTGAGGGTTGGTTGGCC |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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