SGN Marker T1625
SGN-M2144
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 98
Tomato EST read: TRZAA66TH
Arabidopsis best BAC match: AL030978.1
Arabidopsis position: 4.1390000
Arabidopsis identities: 0.868
Best GenBank protein hit: BAA97523.1
Evalue: 1.4e-92
Identities: 0.879
Description: "1,4-benzoquinone reductase-like; Trp repressor binding"
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TRZAA66TH
Arabidopsis best BAC match: AL030978.1
Arabidopsis position: 4.1390000
Arabidopsis identities: 0.868
Best GenBank protein hit: BAA97523.1
Evalue: 1.4e-92
Identities: 0.879
Description: "1,4-benzoquinone reductase-like; Trp repressor binding"
Comment:
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T1625 was used as an overgo probe on plate 12 [well E5]
Plausible BAC Matches: P323A14
Overgo Sequences
A sequence
CAGTTGAAGGCGTAGAAGCCAAAC
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B sequence
TCTGGTACCTGCCATAGTTTGGCT
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AB sequence
CAGTTGAAGGCGTAGAAGCCAAACTATGGC
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Marker sequence
GCTCTTTCTTTTCTATTCTATTCCAACAACAACTCATTCATCCACCTACT
ACTTTCCCTTTCAAATGGCAACCAAAGTCTACATTGTTTACTACTCCATG TATGGACATGTTGAGAAGCTAGCACAAGAGATAAAGAAAGGAGCCGCATC AGTTGAAGGCGTAGAAGCCAAACTATGGCAGGTACCAGAAACTCTTTCAG AAGAGGTTCTTGGAAAGATGGGTGGACCAGCAAAAGGCGATGCACCAATT ATCACACCCAATGACCTTGCTGAAGCTGATGGCTTTGTGTTTGGATTCCC AACAAGATTTGGGATGATGGCTGCTCAGTTCAAGGCATTTCTTGATGCCA CTGGTGGTCTCTGGAGAACTCAGCAGCTTGCAGGCAAGCCAGCGGGCCTT TTCTACAGTACTGGCTCTCAAGGAGGTGGCCAAGAGACTACTGCGTTGAC TGCAATTACTCAGCTTGTTCACCATGGAATGATCTTTGTCCCGATTGGTT ACACATTTGGTGCTGGCATGTTCGAGATGGAGAAGATTAAAGGTGGAAGT CCTTACGGTGCAGGAACTTTTGCTGGAGATGGCTCTAGACAGCCAACAGA TCTTGAACTGGAGCAAGCTTTCCACCAGGGAAAACACATTGCTACCATCG CAAAGAAGCTCA |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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