SGN Marker T1627
SGN-M2146
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 99
Tomato EST read: TRZAA77TH
Arabidopsis best BAC match: AC004521.2
Arabidopsis position: 2.2390000
Arabidopsis identities: 0.673
Best GenBank protein hit: AAC16080.1
Evalue: 1.7e-45
Identities: 0.635
Description: unknown protein [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TRZAA77TH
Arabidopsis best BAC match: AC004521.2
Arabidopsis position: 2.2390000
Arabidopsis identities: 0.673
Best GenBank protein hit: AAC16080.1
Evalue: 1.7e-45
Identities: 0.635
Description: unknown protein [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato - Kazusa and SolCAP markers mapped to genome |
| ![]() Kazusa F2-2000 genetic map |
| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T1627 was used as an overgo probe on plate 9 [well E2]
Plausible BAC Matches: P271J03
Overgo Sequences
A sequence
GCCTTATGTTGGAGGTAATGCACC
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B sequence
ATCTGGTGTAGGAGCTGGTGCATT
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AB sequence
GCCTTATGTTGGAGGTAATGCACCAGCTCC
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Marker sequence
GTGTAATTGGAAATTCAGACACAGAAAAGGACAAAGAAGAGTGTACACAA
TCATTGATTGGTCTGGCAACATGTTTGCCTTATGTTGGAGGTAATGCACC AGCTCCTACACCAGATTGCTGTACTGGATTGAAACAAGTGTTGAAAGATA GCAAGAAGTGTCTTTGTTTGTTAATTAAGGACAGAAATGATCCTGATTTG GGACTTCAACTCAATGTTACACTTGCTTTAACACTCCCCTCTGTTTGTAA AGCCCCTGCTAATATTTCTGAATGCCCTGCACTTCTCCACTTGCCTGCAA ATTCACCAGATGCTCAAGTATTCTATCAAATTGCTAATAATTCAAGCAGC ATTGCTGGTAGTCCACTTGCACATAGCCCCATTCCTTCTGTTGGATCTAG TCCTACAGGTGCCCCTGCTGGTGCTCCTAAATCTGCTGGTTGTCATATTG GAAAGAGATATTTTGGATTAGAAGCAATTGTTGGTGTAGTCCTTCTTTGG TCTTTAACTTCAAATTTCTTCATAGGATGAGTTTAATAACCTTATTTTGT ATCATAATAATCAAAGCTATCACTTTGTTAAATGG |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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