SGN Marker T1651
SGN-M2162
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 6.13
Tomato EST read: TRZBB95TH
Arabidopsis best BAC match: AC007178.5
Arabidopsis position: 2.0180000
Arabidopsis identities: 0.731
Best GenBank protein hit: AAC62611.1
Evalue: 1.6e-74
Identities: 0.714
Description: subtilisin-like protease [Arabidopsis thaliana]
Comment: unclear functional characterization
More information about COS markers can be found on the COS markers page.
Tomato EST read: TRZBB95TH
Arabidopsis best BAC match: AC007178.5
Arabidopsis position: 2.0180000
Arabidopsis identities: 0.731
Best GenBank protein hit: AAC62611.1
Evalue: 1.6e-74
Identities: 0.714
Description: subtilisin-like protease [Arabidopsis thaliana]
Comment: unclear functional characterization
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T1651 was used as an overgo probe on plate 1 [well H12]
Plausible BAC Matches: None
Overgo Sequences
A sequence
GGATATGGAAACGGGACAGCAAAG
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B sequence
CTTTTGGTGATCCACCCTTTGCTG
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AB sequence
GGATATGGAAACGGGACAGCAAAGGGTGGA
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Marker sequence
ATTTCAACAAAGGGTACGCTACACTAGCAGGATCGCTAAATTCAACCTTC
AATACACCGCGAGACACTGATGGCCATGGTTCCCACACGTTGTCCACAGC CGGTGGAAACTTTGTTGAAAGATCAAGTGTTTTCGGATATGGAAACGGGA CAGCAAAGGGTGGATCACCAAAAGCAAGAGTAGCAGCTTACAAAGTTTGC TGGACTCCAATTTCAGGCAATGAGTGTTTCGATGCAGACATCTTGGCTGC ATTTGATATGGCTATTCATGATGGCGTTGACGTCCTTTCTGTATCACTAG GAGGAGATGCAGTACCCTATGCCAATGACAGCATTGCTATCGGTTCGTTT CATGCTGTTAAGCATGGCATTGTTGTGGTTACCTCTGCTGGTAACTCTGG TCCTGCTGTTAGTACAGTATCAAACGTTGCACCTTGGGTCATTACTGTCG GTGCAAGCACTATGGATCGGCAGGTCCCTAGCTATGTAACACTCCGAAAC AACAAGTGTTACAAGGGAGAAAGCTTATCTGTTGAAGCATTGCCTAAAAG AAAGTTATTCCCAATCATTACTG |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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