SGN Marker T1675
SGN-M2182
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 10.01.01.99
Tomato EST read: TRZBD37TH
Arabidopsis best BAC match: AC012563.5
Arabidopsis position: 1.1331000
Arabidopsis identities: 0.822
Best GenBank protein hit: AAF16557.1
Evalue: 2.6e-71
Identities: 0.754
Description: unknown protein; 35653-33693 [Arabidopsis thaliana]
Comment: similar match with gb|AAF32298.2|AF216523_1 (AF216523) FKF1 [Arabidopsis thaliana]
More information about COS markers can be found on the COS markers page.
Tomato EST read: TRZBD37TH
Arabidopsis best BAC match: AC012563.5
Arabidopsis position: 1.1331000
Arabidopsis identities: 0.822
Best GenBank protein hit: AAF16557.1
Evalue: 2.6e-71
Identities: 0.754
Description: unknown protein; 35653-33693 [Arabidopsis thaliana]
Comment: similar match with gb|AAF32298.2|AF216523_1 (AF216523) FKF1 [Arabidopsis thaliana]
More information about COS markers can be found on the COS markers page.
![]() |
| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T1675 was used as an overgo probe on plate 1 [well G7]
Plausible BAC Matches: None
Overgo Sequences
A sequence
GAGAAACTTGCCAGTCTCACTGTG
|
B sequence
TATTCGCTGGACTCGTCACAGTGA
|
AB sequence
GAGAAACTTGCCAGTCTCACTGTGACGAGT
|
Marker sequence
GAATATTTAAGCATCCATCTCATGATATACTATATGTTGACATCATTTAC
TGTTGAGGAATCTTGACACGTTCACTGAATTATTTTCAGTCGGTTTTTGC AATTTAGAGATCCACGCGCTCAAAGGCGGCATCCTTTGGTGGATCCTGTT GTTGTTTCTGAGATCAGAAGATGTCTTGAAGAAGGTGTTGATTTCCAAGG GGAGCTTCTCAACTTTAAAAAAGATGGTACACCTGTGGTGAATAGGCTAA GACTTGCACCCATACATAGTGATGATGGCACAGTGACCCATATTATAGGG ATTCAAATGTTTTCTGAAACAAAAATTGACCTGAATACTGTGTCATATCC CGTTTTCAGAGAAACTTGCCAGTCTCACTGTGACGAGTCCAGCGAATACT CCATTAAAAGCGGTAATTTATTGCATTGTCAGCACCGTGAAATATGCGGT ATTCTTCAGCTCTCTGATGAAGTTCTAGCTCACAACATTTTATCTCGATT GACTCCAAGGGATGTTGCATCCATTGGTTCTGTTTGTAGAAGGATACGCC AATTGACGAAAAATGAGCATGTGAAAAAAATGGTCTGTCAAAATGCATGG GGAGCTGATGTCAC |
![]() |
Related Genotyped Markers: These markers have been genotyped and share a name with this marker
![]() |
User comments |
Please wait, checking for comments. (If comments do not show up, access them here)