SGN Marker T1679
SGN-M2185
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 99
Tomato EST read: TRZBD60TH
Arabidopsis best BAC match: AC006264.3
Arabidopsis position: 2.1210000
Arabidopsis identities: 0.480
Best GenBank protein hit: AAD29806.1
Evalue: 2.1e-47
Identities: 0.560
Description: putative disease resistance response protein [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TRZBD60TH
Arabidopsis best BAC match: AC006264.3
Arabidopsis position: 2.1210000
Arabidopsis identities: 0.480
Best GenBank protein hit: AAD29806.1
Evalue: 2.1e-47
Identities: 0.560
Description: putative disease resistance response protein [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T1679 was used as an overgo probe on plate 3 [well B1]
Plausible BAC Matches: P072N16
Overgo Sequences
A sequence
ATATGGGTGGCTCAAGCACAAGAC
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B sequence
TAGCCCATGACGTTTGGTCTTGTG
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AB sequence
ATATGGGTGGCTCAAGCACAAGACCAAACG
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Marker sequence
GCCAGCAAGTCCTTAGCATAACTCATATCTGGATCTTGCTCTCACGTATT
TTTTCCGCAAGTCATCACGAGATAGATCATGAAAAAAATTATTTTGCTTG TCATATTTGCGAACCTATTTATATGGGTGGCTCAAGCACAAGACCAAACG TCATGGGCTAAGAGAGTTGATACAGGCAAAGAGGTTGTTACAACTCTTCA ATTCTACTTCCACGATAAACTCAGTGGATCAAACCCGAGTGCGGTTCAAA TTGCACAAGCTGCTAGGACTAACAATTCGGGTACCTTATTTGGATCTTTG TTGATGATTGATGATCCACTTACTATTGGACCTGACCCAACTTCAAAGCT AATAGGTAGAGCCCGTGGACTATATGGGTCTGCTGGTCAAACTGATATGG GCCTTATCATGGCAATTAGTTATGGGTTCTTGGATGGTATCTATCAAGGG AGTTCATTTAGCCTATTGAGTTTGAACCCGGTAATGAACCCGGTTCGTGA GATGGCTATCGTTGGTGGGACCGGACTTTTTCGGTTGGCCCGTGGGTATG CTCTTGCTCAAACGTATTCGGCAAATCCTAATGGTGATGCAATTGTTGGC TACAATGTTACAATTGTCACATATGTTTGAA |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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