SGN Marker T1680
SGN-M2186
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 5.01
Tomato EST read: TRZBD70TH
Arabidopsis best BAC match: AC002332.2
Arabidopsis position: 2.1870000
Arabidopsis identities: 0.829
Best GenBank protein hit: AAB70426.1
Evalue: 5.7e-40
Identities: 0.975
Description: Strong similarity to 60S ribosomal protein L17 (gb|X01694).[Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TRZBD70TH
Arabidopsis best BAC match: AC002332.2
Arabidopsis position: 2.1870000
Arabidopsis identities: 0.829
Best GenBank protein hit: AAB70426.1
Evalue: 5.7e-40
Identities: 0.975
Description: Strong similarity to 60S ribosomal protein L17 (gb|X01694).[Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T1680 was used as an overgo probe on plate 7 [well E5]
Plausible BAC Matches: P178O02, P184G14
Overgo Sequences
A sequence
TGAAGAAGGGTAAGCCCGATCTCA
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B sequence
GGCATGACTTTCTTCCTGAGATCG
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AB sequence
TGAAGAAGGGTAAGCCCGATCTCAGGAAGA
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Marker sequence
GGTCATGGCTATCGTGAAGAAGGGTAAGCCCGATCTCAGGAAGAAAGTCA
TGCCTGCCGTCATTGTTCGTCAGCGCAAGCCATGGCGCCGAAAGGACGGT GTCTTCATGTACTTTGAAGATAATGCTGGTGTAATTGTGAACCCCAAGGG AGAAATGAAAGGATCTGCAATTACAGGGCCAATTGGGAAAGAGTGTGCTG ATCTTTGGCCAAGAATTGCAAGTGCTGCTAATGCTATTGTGTAGAAGAGT TCCCTTGAGTAGTTTGAAATTCTTGTTTTTAACAGTTAAATTTATGTTTT TGGATATCAGATTGTTTTCTTATTAAGAGATCAGTTTTTGCCGGTTTG |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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