SGN Marker T1700
SGN-M2203
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 99
Tomato EST read: TRZBG45TH
Arabidopsis best BAC match: AP002063.2
Arabidopsis position: 3.0172000
Arabidopsis identities: 0.706
Best GenBank protein hit: AAG12880.1
Evalue: 1.3e-76
Identities: 0.733
Description: senescence-associated protein-like [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TRZBG45TH
Arabidopsis best BAC match: AP002063.2
Arabidopsis position: 3.0172000
Arabidopsis identities: 0.706
Best GenBank protein hit: AAG12880.1
Evalue: 1.3e-76
Identities: 0.733
Description: senescence-associated protein-like [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T1700 was used as an overgo probe on plate 8 [well C2]
Plausible BAC Matches: P039C13
Overgo Sequences
A sequence
GGTGCTTGTTTCCATGTTGCATGG
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B sequence
AGTAGAGCCAAAGTGCCCATGCAA
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AB sequence
GGTGCTTGTTTCCATGTTGCATGGGCACTT
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Marker sequence
GCAAGAACCTTGTGAAGTAGAAAATATGTATAGATTTAGCAACACAGTAA
TAGGTTTCTTGAATCTATTCACACTTTTAGCATCCATTCCGATCATAGGT GCTGGATTATGGATGGCAAGGAGTAGTACAACATGTGAGAAATTTCTTCA AACACCACTTTTGTTCATAGGTTTCATAATCCTTATAGTTTCATTGGCTG GTTTCATTGGTGCTTGTTTCCATGTTGCATGGGCACTTTGGCTCTACTTA TTTGTCATGTTGTTCCTCATAGGGGCATTAATGGGGCTAACTGTTTTTGG TTTTGTGGTAACAAGCCAAGGTGGTGGACTTGATGTGCCTGGTAAAGTAT ATAAAGAGTATCATCTTCAAAATTACTCACCATGGTTGAGAAAGAGGATT AAGGATCCTCAATATTGGCTCACTGTTAGAGCTTGTATTTTGGGTTCCAA GACTTGTGCTAATGTTATTACTTGGACTCCCTATGATTATCTTACGAAAG ATTTGACTCCTATTCAGTCAGGATGTTGCAAGCCACCAACAGCATGCAAC TATGGATTGACAACAATGAC |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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