SGN Marker T1744
SGN-M2239
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 98
Tomato EST read: TRZBJ79TH
Arabidopsis best BAC match: AC002505.2
Arabidopsis position: 2.1490000
Arabidopsis identities: 0.637
Best GenBank protein hit: AAF98368.1
Evalue: 5.5e-38
Identities: 0.684
Description: patatin-like protein 1 [Nicotiana tabacum]
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TRZBJ79TH
Arabidopsis best BAC match: AC002505.2
Arabidopsis position: 2.1490000
Arabidopsis identities: 0.637
Best GenBank protein hit: AAF98368.1
Evalue: 5.5e-38
Identities: 0.684
Description: patatin-like protein 1 [Nicotiana tabacum]
Comment:
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato - Kazusa and SolCAP markers mapped to genome |
| ![]() Kazusa F2-2000 genetic map |
| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T1744 was used as an overgo probe on plate 11 [well B5]
Plausible BAC Matches: P208N01
Overgo Sequences
A sequence
ACAGCCATGTTAGCTGCACCAAAC
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B sequence
GAGGGCGTTTAGCTTTGTTTGGTG
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AB sequence
ACAGCCATGTTAGCTGCACCAAACAAAGCT
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Marker sequence
GGTGAGATGAACTAATTGTTAAGTCTCTATACATAGGAGTGTTATTTTTA
CGTGAACTTATCTTTTGGATATTCCGATGGAAAACTCAGCTGCAGTTGGA GTAGCAATGCCGCCTCCTAACAAAGGGAAGCTAATAACCATTCTCTCCAT CGATGGAGGAGGAATTAGAGGAATCATTCCCGGGGTTATCCTTGCATATC TTGAATCACAACTTCAGGAATTGGATGGTGAAGATGCAAGAATCGCGGAT TATTTTGACTTGATAGCAGGAACAAGCACGGGCGGCCTTGTAACAGCCAT GTTAGCTGCACCAAACAAAGCTAAACGCCCTCTTTATGCTGCCAAAGATA TTACTCCTTTCTATCTTGAGCACTCCCCCAAAATCTTTCATCAGATTGGT GGACCATTTGGTGGGGCAATAAATCTAACAAAAATGTTGAACAGACCAAA ATATGATGGGAAGTATCTTCACACACTTATAAAGGGACTCCTANGAGGTA CCAAGTTGCATGATACCTTAACTGCCGGCGTAATCCCAACTTTTGACATC AAGGAACTTTAGCCTGTCAT |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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