SGN Marker T1775

SGN-M2262
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis

SynonymsNone
Locus associationsNone
COS information 
MIPS Category: 99
Tomato EST read: TRZBM68TH
Arabidopsis best BAC match: AC008017.2
Arabidopsis position: 1.1400000
Arabidopsis identities: 0.812
Best GenBank protein hit: AAD55656.1
Evalue: 1.8e-19
Identities: 0.816
Description: Hypothetical protein [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
Mapped locations  
Map: Tomato-EXPEN 2000   
Map version
52 (location: 39776)
Chromosome
6
Position
43.30 cM
Confidence
I
Protocol
RFLP


Tomato-EXPEN 2000
Overgo hybridization and physical mapping 
T1775 was used as an overgo probe on plate 1 [well B5]

Plausible BAC Matches:   None

 Overgo Sequences

A sequence
GATGTAGTCACCTTCCTTGACCCT
B sequence
GAATAAGCTCCATGGGAGGGTCAA
AB sequence
GATGTAGTCACCTTCCTTGACCCTCCCATG
Marker sequence
TGCAGTATCCTCAAGCAACAGCTGCACCAGAGAGGGCGCGCGCCCGTAGC
CTCGCGGTCTTCTCCCCAAAAATAATCACTTGCAAAAATCGGCAGCAAGC
TTCGCATTTCTGTTCCACAAAGTTTGGCTCAGCTCTTCCGTCCGGCACGT
CTCTGTCAATTTCGCGTCGGGCGAACTACAATGCCGCCGTACGGGCAACT
TCGTCTTCATTCTCCAGCTCTGCCTCACCGTGGGATGAAAAACCCTACCA
AGTTTTACCGAATGGCAAGATAGTGTACTTGGACGAACAGGATGTAGTCA
CCTTCCTTGACCCTCCCATGGAGCTTATTCCTTTGGATCCATCTTCTTAT
AATCCCGCCCTTTATCTCTGGAAG
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of T1775  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D2262 marker 2262
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