SGN Marker CT189

SGN-M236

SynonymsNone
Locus associationsNone
RFLP details 
Insert size
750
Vector
pBLUESC
Cutting Site
EcoR1
Drug Resistance
AMP
Image
CT189 image not available
Forward sequence
CAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGC
GCTCCGGAAAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACT
ACATCAGAGCTGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGA
GGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTG
ACTTTGAGCCTAAGGGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGGTGCCGGACAGATTGCTGTTGCTTGTTAAG
AGAGAGATGAGCTCATTCAATTTTATGAA
Reverse sequence
TTTTTTTTTTTTTTGAATCTCAGGGATTTATGTATAATTATGAAGTAATGATGCATTGAATGCAACATATGCCACAATACACACTTCAGG
GTACTAAAAGGGCAAAACTTGACATACTGAGAAAGACAATTCTGAAAAGGCAAAACATCCACAATTTAATTCAACAATACCCTAAATCTA
TTTAGGTCCAAACAGAAACAATAAGTTTGAGCTAACTCATGTATTCATAAAATTGAATGAACTCATCTCTCTCTTAACAAGCAACAGCAA
TTCTTCCGGCAACTTGGTCAAGATCCCGCTGACCACTGGATGTGATCCTCCTTCCGCCCTTAGGCTCAAAGTCAATGATGTTCATGTTCT
GCAACTGTTGAAGAATGTGGCGTGCAACTGAACCACTGCTCTTGCAAAAGTGACGTGGACGGCTTCCATTCCTCTGGTTTCCACCATAGA
TTCTTCGGAAACCACCAACACCAATACCTCCTCTCAAATAGATCTTCCTTGCCATGGAAGCAGCTCTG
RFLP sequence matches to unigenes 
Unigenee valueMatch length (bp)Strand
SGN-U1442321.3e-78367 (76.6% of RFLP seq)+
SGN-U1610733.7e-85178 (37.2% of RFLP seq)+
SGN-U144357478 (99.8% of RFLP seq)+
SGN-U1442324.1e-51237 (45.8% of RFLP seq)-
SGN-U1610731e-146269 (51.9% of RFLP seq)-
SGN-U144357499 (96.3% of RFLP seq)-
Mapped locations  
Map: Tomato-EXPEN 2000   
Map version
52 (location: 39001)
Chromosome
12
Position
59.00 cM
Confidence
I(LOD2)
Protocol
RFLP


Tomato-EXPEN 2000

Map: Tomato-EXPEN 1992   
Map version
28 (location: 8706)
Chromosome
12
Position
42.60 cM
Confidence
I(LOD2)
Protocol
RFLP


Tomato-EXPEN 1992
Overgo hybridization and physical mapping 
CT189 was used as an overgo probe on plate 6 [well G4]

Plausible BAC Matches:   P144B17,   P268N19,   P316N15,   P331D02,   P263F11,   P128M19

 Overgo Sequences

A sequence
TGCAAGAGCAGTGGTTCAGTTGCA
B sequence
GTTGAAGAATGTGGCGTGCAACTG
AB sequence
TGCAAGAGCAGTGGTTCAGTTGCACGCCAC
Marker sequence
CAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCC
CCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAA
GATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGG
AGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGCTTCCATG
GCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAG
AATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCA
AGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATG
AACATCATTGACTTTGAGCCTAAGGGCGGAAGGAGGATCACATCCAGTGG
TCAGCGGGATCTTGACCAAGGTGCCGGACAGATTGCTGTTGCTTGTTAAG
AGAGAGATGAGCTCATTCAATTTTATGAA
Genomic location of CT189  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D236 marker 236
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