SGN Marker CT260
SGN-M241
| Synonyms |
| Locus associations |
| RFLP details |
|
Insert size
750
|
Vector
pBLUESC
|
Cutting Site
EcoR1
|
Drug Resistance
AMP
|
Image
CT260 image not available
|
|
Forward sequence
CTTTTTTTTTTTTTTTTTTTTTATGGAAACATTTTTAAACACAATATGATATATATTGTACAACAAAACATTACATCATGACCAACCATT
CATAGTACGTAAATGAATGGCTTTATTCATACTTGTTACAAGCAAAGGGCCTTAATTAAGTAGCAAGATTATTATTATCTTGTCACTTAA TTTCAAAAGGTTACCATAATAATAAATACACATAATTAAGCACTAATTAATTATTTAATTTTGAGTCTGGGCAGCAACATATTCTTCATA AGAGCAGCAGTATTTTTCTCACCGGAAGAATGGAATCTGTTACCAAGCATGCAATTGTGATTAAAATCATGGGTCGTACGGGATCCATGG GGCAGGTGACTCAGGTGAGAGTCAAGTTTCTTGATGACCAAAACAGGTTTATCATGAGAAATGTCAAGGGACCAGTCAGAGAGGGTGATA TTCTCACACTGTTGGAATCTGACAAGGAAGCCAAGAGGTTGCGT |
|
Reverse sequence
not available
|
| RFLP sequence matches to unigenes |
| Unigene | e value | Match length (bp) | Strand |
|---|---|---|---|
| SGN-U143599 | 1.2e-32 | 80 (16.2% of RFLP seq) | + |
| SGN-U160334 | 2.5e-52 | 163 (33.0% of RFLP seq) | + |
| SGN-U143601 | 9.9e-89 | 212 (42.9% of RFLP seq) | + |
| SGN-U160332 | 1.7e-96 | 193 (39.1% of RFLP seq) | + |
| SGN-U143600 | 1e-106 | 222 (44.9% of RFLP seq) | + |
| SGN-U143167 | 4e-134 | 256 (51.8% of RFLP seq) | + |
 Mapped locations
|
Mapped locations
|  Tomato-EXPEN 1992 |
|  Tomato-EXPEN 1992 |
|  Tomato-EXPEN 1992 |
| Overgo hybridization and physical mapping |
CT260 was used as an overgo probe on plate 14 [well A9]
Plausible BAC Matches: None
Non-Plausible BAC matches
P158E21,
P223A11,
P254A20,
P226G20,
P066D12,
P223M24,
P297G04,
P238I06,
P282K16,
P073J03,
P212M19,
P014C09,
P253B18,
P316C19,
P056M20,
P050L01,
P301D15,
P013N17,
P194O14,
P123N10,
P180L14,
P253I01,
P313N08,
P234C21,
P134N11,
P031E22,
P268K15,
P135H07,
P059P01,
P224M20,
P006H15,
P312P11,
P173J02,
P025M03,
P169H21,
P329N10,
P139C11,
P066L04,
P025D18,
P033D17,
P011G05,
P149G20,
P034N11,
P154P09,
P079F11,
P174P12,
P328J16,
P170L22,
P003G10,
P288E11,
P225A23,
P171G14,
P043C20,
P030C15,
P134O19,
P259N14,
P302I08,
P333M10
Overgo Sequences
|
A sequence
GAAATGTCAAGGGACCAGTCAGAG
|
|
B sequence
GTGAGAATATCACCCTCTCTGACT
|
|
AB sequence
GAAATGTCAAGGGACCAGTCAGAGAGGGTG
|
|
Marker sequence
CTTTTTTTTTTTTTTTTTTTTTATGGAAACATTTTTAAACACAATATGAT
ATATATTGTACAACAAAACATTACATCATGACCAACCATTCATAGTACGT AAATGAATGGCTTTATTCATACTTGTTACAAGCAAAGGGCCTTAATTAAG TAGCAAGATTATTATTATCTTGTCACTTAATTTCAAAAGGTTACCATAAT AATAAATACACATAATTAAGCACTAATTAATTATTTAATTTTGAGTCTGG GCAGCAACATATTCTTCATAAGAGCAGCAGTATTTTTCTCACCGGAAGAA TGGAATCTGTTACCAAGCATGCAATTGTGATTAAAATCATGGGTCGTACG GGATCCATGGGGCAGGTGACTCAGGTGAGAGTCAAGTTTCTTGATGACCA AAACAGGTTTATCATGAGAAATGTCAAGGGACCAGTCAGAGAGGGTGATA TTCTCACACTGTTGGAATCTGACAAGGAAGCCAAGAGGTTGCGT |
| Related Markers
|
Related Genotyped Markers: These markers have been genotyped and share a name with this marker
| Genomic location of CT260
|
| User comments |
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