SGN Marker TG339
SGN-M27
Synonyms |
Locus associations |
RFLP details |
Insert size
1290
|
Vector
pGEM4Z
|
Cutting Site
PST1
|
Drug Resistance
AMP
|
Image
TG339 image not available
|
Forward sequence
CATTATTCAGCAGAAACAACAACATAGTAGCGTAATCCCACAGTTTATACAGAAACCTTACCCCTCTAACTACTGAGGTAAACATAGATC
TATCATATGCTTTGTAAATGCCTACCAAAAAAAGGGCCTCTATTAAAACAGATGGAATATTAAGTCATATTCTTCTTTAAAAACCCAAGC TAAAGGTATGGATGGATATGTACTTACTGCCTTCAATAAAGTTTAATCTTGACTTGATACAAAATTAATAGACACATATCCAAGTGAACA AAATGGAGTAGACAATCAAAATGCAGAATATGAAGGAAGATCAATCCACAATGCTCTACTTCTTCGAGAAAAAGGAAATAAAAAGTACTA CTTGCTTCGTGAAAATAAATATTCATTTCCACGAAATAAGAGAGCTTCATCAGAGCATCCAAATACAAGAGAAATACGTAGACAAAAGGT AATCTTTGATGAAAACAACAAATGGCAAGAAACAGCGCCTTTAGGTAATAGGTATTACAAATCACAGGATAAGGACTACAAACAGCCAAT TTTGATCAATGAGTAAAATTACATCATCGGTTGTCAATTCTAAGCAAAGAAGTTTCACTCACGATGTTACTACTCATTATCAGCTTTTGA TGGTTCTTTGATCTCATCAGTTCCATCATCCT |
Reverse sequence
AGAATACTCTTTCGGCCTACAAGTCTGCTCAGGTATTTAGACTTTCATTCTTTATAAAATGTGGAGGAAAATCTCATATGAGTTCTGCGA
ACGGGAATGTTCTATGTGTGTTAAATTAGGAAATTGCATAAACAAGTACTGCAAGTCACCATTTTTATTTAGAAGAGTAACCAAAATCCA TTAGAATTCGTCGTCCAAGGGAAAAAAATGTTTCCCGTGGTGAACCATGTAGTATTATTTAATCGAAGCATGAACATGACGTCTCTCTCT TTTTCAGGATATCGCTAATGGCGAATTGGCCCCAACACATCCAATCCGATTGGGTCTAGCTCTCAATTTCTCAGTGTTTTACTATGAGAT ATTGAATTCTCCTGATCGTGCTTGTAATCTCGCCAAACAGGTAACAAATTTATTGTATTCCTTGTTTCTTAATTGAGCATCCAGGGTGAT TTTGGAAAGAAAAATAGATGTTTGTGTCTATTCAATGATGTTTATGGTTTGTATGGTTGTGTAATATGCCTTTGATGAGGCAATTGCGGA GCTTGACACCCTGGGAGAGGAGTCCTACAAGGATAGCACTTTGATTATGCAACTTCTGCG |
RFLP sequence matches to unigenes |
Unigene | e value | Match length (bp) | Strand |
---|---|---|---|
SGN-U143635 | 4.9e-08 | 29 (4.4% of RFLP seq) | + |
SGN-U143636 | 6e-168 | 297 (44.9% of RFLP seq) | + |
SGN-U146737 | 4.2e-05 | 68 (11.3% of RFLP seq) | - |
SGN-U144247 | 4.2e-05 | 80 (13.3% of RFLP seq) | - |
SGN-U144240 | 1.1e-05 | 41 (6.8% of RFLP seq) | - |
SGN-U143636 | 1.8e-10 | 33 (5.5% of RFLP seq) | - |
SGN-U143635 | 1.2e-14 | 80 (13.3% of RFLP seq) | - |
SGN-U144318 | 3e-15 | 77 (12.8% of RFLP seq) | - |
SGN-U144317 | 4.9e-17 | 80 (13.3% of RFLP seq) | - |
SGN-U144317 | 8e-19 | 103 (17.2% of RFLP seq) | - |
SGN-U144318 | 2.1e-22 | 101 (16.8% of RFLP seq) | - |
SGN-U143635 | 2.4e-34 | 97 (16.2% of RFLP seq) | - |
SGN-U143636 | 2.6e-40 | 83 (13.8% of RFLP seq) | - |
SGN-U143636 | 3.7e-67 | 128 (21.3% of RFLP seq) | - |
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| ![]() Tomato QTL map |
| ![]() Potato meta-QTL consensus map |
| ![]() Eggplant-COSII |
| ![]() Eggplant-LXM 2002 |
| ![]() Tomato-EXPEN 1992 |
Overgo hybridization and physical mapping |
TG339 was used as an overgo probe on plate 10 [well B5]
Plausible BAC Matches: None
Overgo Sequences
A sequence
GTTCCATCATCCTGAGTGGAGAAG
|
B sequence
AGGTGATCCTTCTCCGCTTCTCCA
|
AB sequence
GTTCCATCATCCTGAGTGGAGAAGCGGAGA
|
Marker sequence
CATTATTCAGCAGAAACAACAACATAGTAGCGTAATCCCACAGTTTATAC
AGAAACCTTACCCCTCTAACTACTGAGGTAAACATAGATCTATCATATGC TTTGTAAATGCCTACCAAAAAAAGGGCCTCTATTAAAACAGATGGAATAT TAAGTCATATTCTTCTTTAAAAACCCAAGCTAAAGGTATGGATGGATATG TACTTACTGCCTTCAATAAAGTTTAATCTTGACTTGATACAAAATTAATA GACACATATCCAAGTGAACAAAATGGAGTAGACAATCAAAATGCAGAATA TGAAGGAAGATCAATCCACAATGCTCTACTTCTTCGAGAAAAAGGAAATA AAAAGTACTACTTGCTTCGTGAAAATAAATATTCATTTCCACGAAATAAG AGAGCTTCATCAGAGCATCCAAATACAAGAGAAATACGTAGACAAAAGGT AATCTTTGATGAAAACAACAAATGGCAAGAAACAGCGCCTTTAGGTAATA GGTATTACAAATCACAGGATAAGGACTACAAACAGCCAATTTTGATCAAT GAGTAAAATTACATCATCGGTTGTCAATTCTAAGCAAAGAAGTTTCACTC ACGATGTTACTACTCATTATCAGCTTTTGATGGTTCTTTGATCTCATCAG TTCCATCATCCT |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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