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SGN Marker TG462

SGN-M307

SynonymsNone
Locus associationsNone
RFLP details 
Insert size
1500
Vector
pGEM4Z
Cutting Site
PST1
Drug Resistance
AMP
Image
TG462 image not available
Forward sequence
AAATCGTCACGCCATTGTAGGGCTTTAATTTCAAAGTGCAATTAAAAGGGGAGGTATATTTTTCTGGCTCTTTTTATGCAAGTATTTTGT
AGTATGGATGGAGATGTGCAGTATATGGTGTTCTAAGTGCCTAAAGCTTTGAGTTGTGAAAGATCTCTAGTTTGTCAATTCTACTTGGAA
TTTGTTTTGTTTGGCGGCAGTTTCAGCTGGATATAATTGATCAGCCAAGAACTGAGATATTTTAATAAGATGTTTAAAGTGATAAATGCA
TTGAAGATTAAGCAGAAATGAATTAGATGAGGAGCATCCTATACTGTGAGTGAGTTCCTTCAGCCACATCCATGGTTGAGGTCTCTTTCC
CTTTTTTGCACTCTTTCACATTCACTAATATTGCCTAAACTGCAATATTCACGGAGTTCGATTGTATGACATTACTGCGCATATCTCTAG
CCTGAGGAGTTATGTTCCAACTTGATGAGCTTCATTTTGTTTTATGCTGTAACT
Reverse sequence
GAATAAATAGTGGATGATTTATTCCCTGCATCATTCAACAAAAATGAAGCCACGTGCAGCACCTTAACACAAAAGTAAAGGGGCATTAGT
TTGGTTATGTTTGTTGCCCCATCTTTGATATGTAAACTTGACAGAGAGGCAAGCACAAAGTGCCTTGCAGTTTGTATCATATGTTTAGTG
TGGAATTTTGAGTGTTTTTTCTTTGGCCTTGGCCTTCTTTTTTTCTTCTTATGGGGATTGTAATTCTATTATGGATTTTAGTGGCTATCA
AGATATTTTATGGATGCACTTTTCGGGATTCTGTTCAATTTGATAAGTTAAGCATCTTCTTCTACATCACATGTGCTTCTCAGCTTTTAA
AAGTCACTTTGGTGGATCAGATGGTAAAAGCAAAGCATATTCCCCATACATGTGCACATGGGATGTATAGCTCAGCAGTTCATTGCTTTT
CTTTGCACCATTTGAAAGTGGATTGGAAATAAAATCTTAAAAGTAAAGTGCAGGCAAACAACACTTAATT
RFLP sequence matches to unigenes 
Unigenee valueMatch length (bp)Strand
SGN-U1533882e-145288 (55.4% of RFLP seq)-
Mapped locations  
Map: Tomato QTL map   
Map version
137 (location: 53894)
Chromosome
2
Position
50.30 cM
Confidence
uncalculated
Protocol
RFLP

Dry_matter_weight_dmw2_1 Titratable_acidity_ta2_1 Eugenol_content_eug2_1 Fruit_weight_fw2_1Soluble_solid_content_ssc2_1 Sugar_content_suc2_1 3_Methylthio_propanal_content_mta2_1 Hex_3_en_1_ol_content__x3o2_1 Fruit_diameter_fd2_1 Color_a_a2_1 Dry_matter_weight_dmw2_2 Sugar_content_suc2_2 Soluble_solid_content_ssc2_2 Color_L_L2_1 Fruit_weight_fw2_2Titratable_acidity_ta2_2 Dry_matter_weight_dmw2_3 Color_b_b2_1Fruit_diameter_fd2_2 Elasticity_ela2_1 Carotene_content_car2_1 2_Isobutylthiazole_content_ibt2_1
Tomato QTL map

Map: Potato meta-QTL consensus map   
Map version
107 (location: 53331)
Chromosome
2
Position
70.48 cM
Confidence
uncalculated
Protocol
unknown

MQTL_1_Late_blight_2 MQTL_2_Late_blight_2 MQTL_3_Late_blight_2
Potato meta-QTL consensus map

Map: Tomato-EXPEN 1992   
Map version
28 (location: 8850)
Chromosome
2
Position
68.00 cM
Confidence
I(LOD2)
Protocol
RFLP


Tomato-EXPEN 1992

Map: Potato-TXB 1992   
Map version
27 (location: 8851)
Chromosome
2
Position
12.00 cM
Confidence
I(LOD2)
Protocol
RFLP


Potato-TXB 1992
Overgo hybridization and physical mapping 
TG462 was used as an overgo probe on plate 16 [well A11]

Plausible BAC Matches:   None

 Non-Plausible BAC matches

P282G08,   P165F17,   P218L13,   P172H10

 Overgo Sequences

A sequence
GAGGAGCATCCTATACTGTGAGTG
B sequence
TGTGGCTGAAGGAACTCACTCACA
AB sequence
GAGGAGCATCCTATACTGTGAGTGAGTTCC
Marker sequence
AAATCGTCACGCCATTGTAGGGCTTTAATTTCAAAGTGCAATTAAAAGGG
GAGGTATATTTTTCTGGCTCTTTTTATGCAAGTATTTTGTAGTATGGATG
GAGATGTGCAGTATATGGTGTTCTAAGTGCCTAAAGCTTTGAGTTGTGAA
AGATCTCTAGTTTGTCAATTCTACTTGGAATTTGTTTTGTTTGGCGGCAG
TTTCAGCTGGATATAATTGATCAGCCAAGAACTGAGATATTTTAATAAGA
TGTTTAAAGTGATAAATGCATTGAAGATTAAGCAGAAATGAATTAGATGA
GGAGCATCCTATACTGTGAGTGAGTTCCTTCAGCCACATCCATGGTTGAG
GTCTCTTTCCCTTTTTTGCACTCTTTCACATTCACTAATATTGCCTAAAC
TGCAATATTCACGGAGTTCGATTGTATGACATTACTGCGCATATCTCTAG
CCTGAGGAGTTATGTTCCAACTTGATGAGCTTCATTTTGTTTTATGCTGT
AACT
Genomic location of TG462  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D307 marker 307
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