SGN Marker CT42
| Synonyms |
| Locus associations |
| RFLP details |
|
Insert size
300
|
Vector
pBLUESC
|
Cutting Site
EcoR1
|
Drug Resistance
AMP
|
Image
CT42 image not available
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Forward sequence
CGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTG
TTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAA AGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCATTAAACAACGCTCTGAGTTAAGGTCAAAAAAAAAA |
|
Reverse sequence
TTTTTTTTTTTTTTTTTTTTTTTTGACCTTAACTCAAAGCGTTGTTTAATGGAGAAATGAAACTTGAAAGTTGCTCTTTTTTTCACTTTT
GTTCAACTGATTTTTACAATTTTTTGGGCTTTTACAGTTTTGTTGTTTACATGAAGTTAAGCTAAAGAAAGGATATCAGACTATGAACAA GGCTAGATACAAGAGTGACACCTACCTTGCTCTATACAAAGGGTACATGAAACTAAAACTTGAAGACTTTCTAAACTGCTGCAAACG |
| RFLP sequence matches to unigenes |
| Unigene | e value | Match length (bp) | Strand |
|---|---|---|---|
| SGN-U144230 | 4.5e-09 | 53 (20.9% of RFLP seq) | + |
| SGN-U144231 | 4.5e-09 | 53 (20.9% of RFLP seq) | + |
| SGN-U144009 | 1.1e-09 | 31 (12.3% of RFLP seq) | + |
| SGN-U144008 | 2.9e-10 | 32 (12.6% of RFLP seq) | + |
| SGN-U160904 | 8.2e-20 | 52 (20.6% of RFLP seq) | + |
| SGN-U160904 | 1.7e-42 | 126 (49.8% of RFLP seq) | + |
| SGN-U144009 | 1.4e-64 | 127 (50.2% of RFLP seq) | + |
| SGN-U144008 | 1.5e-67 | 128 (50.6% of RFLP seq) | + |
| SGN-U144230 | 4.8e-09 | 53 (19.9% of RFLP seq) | - |
| SGN-U144231 | 4.8e-09 | 53 (19.9% of RFLP seq) | - |
| SGN-U144008 | 1.2e-09 | 31 (11.6% of RFLP seq) | - |
| SGN-U144009 | 1.2e-09 | 31 (11.6% of RFLP seq) | - |
| SGN-U160904 | 1.4e-21 | 51 (19.1% of RFLP seq) | - |
| SGN-U160904 | 4.5e-40 | 126 (47.2% of RFLP seq) | - |
| SGN-U144009 | 3.7e-62 | 127 (47.6% of RFLP seq) | - |
| SGN-U144008 | 3.9e-65 | 128 (47.9% of RFLP seq) | - |
 Mapped locations
|
Mapped locations
|  Tomato-EXPEN 2000 |
|  Tomato-EXPEN 1992 |
| Overgo hybridization and physical mapping |
Plausible BAC Matches: P090F06, P335M21, P208E05, P230D07, P033C18, P150P23, P175C03, P171F13, P313O21, P145P14, P257J02, P158J01, P328K17, P118D22, P031N18, P090C16, P063F16, P029N19, P214J02, P312K20, P069I12, P106K16, P135A21, P251B02, P134K12, P127I16, P038B17, P289A06, P165O04, P223K01, P306J24, P157E24, P136H06, P300M17, P108B17, P333L23, P316J24, P313M08, P122L18, P163F03, P024B09, P214G13, P233H14, P302B08, P035L03, P070D01, P106H13, P066L24, P173A16, P181E06, P222I17, P169J16, P135K15, P039A10, P320E22, P017H12, P056K17, P313H24, P022H21, P117F20, P196A17, P236K12, P067I10, P201F04, P109B01, P158D01, P304P23, P169I12, P285C17, P313B08, P222A18, P038M13, P313M06, P214K18
Overgo Sequences
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A sequence
AGAGCAAGGTAGGTGTCACTCTTG
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B sequence
TGAACAAGGCTAGATACAAGAGTG
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AB sequence
AGAGCAAGGTAGGTGTCACTCTTGTATCTA
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Marker sequence
CGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTT
GTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCT GATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGA CCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTT TCAAGTTTCATTTCTCCATTAAACAACGCTCTGAGTTAAGGTCAAAAAAA AAA |
| Related Markers
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
| Genomic location of CT42
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| User comments |
Working
