SGN Marker CT101
SGN-M384
Synonyms |
Locus associations |
RFLP details |
Insert size
1300
|
Vector
pBLUESC
|
Cutting Site
EcoR1
|
Drug Resistance
AMP
|
Image |
Forward sequence
CGGAATTCCTTTTTTTTTTTTTTTTTTTGAATATGAAATGCTGAAAAAAAATTCAACCTTGCGTGTTCTTGAACTAAACAATAATCTGAT
TGACTATTCTGGATTTTCAGGTCTTGCTGGATCACTTCTTGAGAATAAAACTTTACAATCCTTGCATCTCAACGGCAATTATGGTGGTGC TTTAGGGGCTGCAGCACTGGCTAAAGGCTTGGAGAGCAATAAGTCCTTGAGGGAACTTTATTTGCAGGGGAACTCTGTTGGCGATGAAGG AGTACGGGCATTAATCTCTGGCCTGTCTTTGCGTAAAGGGAAACTTGTCTTACTTGACCTTGCCAACAATTCAATTACTGCAAGAGGAGC ATTTCATGTTGCCGAATACGTCAAAAAAAGCAAAAGCTTACTGTGGTTGAATCTCTATATGAATGACATTAAAGATGAGGGAGCTGAAAA GATTGCAGAAGCTTTGAAGGAGAACCGCTCGATAACTAATGTTGATCTTG |
Reverse sequence
TTTTTTTTTTTTTTTGAATATGAAATGGTGAATAGAAGTAATCTCTATATACTTGCCACTAATGTTTCAGAAACGGAATGTTATTTATCA
AAATTTCCACCGTCCCCCCGCTCAAAATGATTCAGTCACAAAGGGGAGCTGAGGTCGGACTCTTAGGAATATCATTGGTAAAAGAAAAAA AAATACTCACCTATGCAGCCCTGCCCCAACCTCAAGAATGAAAGCAGGGAGAAAAATAAATCTGATCTAAGGAATGTGGTATTTTAAAAC ATAACAGCAAGCTCCTTCTCAGTCATCTCAAATACATGGTCTCTTGCATCTGTGAGAGCTGTCTGTCCTAATTTGGTGAGGAAGTTACTG GCAAGATTTAAAGATGTGAGTCTAACATCTTCATTTGCTTTAAGTGCTTGAGCGATAGAAAAAGCTCCTTCATCTCTAATTTCATTGAAC CCTAAATTGAGTGTCATCAAAGATTCATTGACTACTT |
RFLP sequence matches to unigenes |
Unigene | e value | Match length (bp) | Strand |
---|---|---|---|
SGN-U162289 | 3.8e-48 | 125 (25.0% of RFLP seq) | + |
SGN-U148811 | 4.3e-57 | 111 (22.2% of RFLP seq) | + |
SGN-U162289 | 2e-105 | 192 (38.4% of RFLP seq) | + |
SGN-U148208 | 389 (77.8% of RFLP seq) | + | |
SGN-U148811 | 472 (96.9% of RFLP seq) | - |
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| ![]() Tomato-EXPIMP 2009 |
| ![]() Potato meta-QTL consensus map |
| ![]() Pepper-COSII |
| ![]() Tomato-EXPIMP 2008 |
| ![]() Tomato-EXPEN 2000 |
| ![]() Tomato-EXHIR 1997 |
| ![]() Pepper-FAO3 |
| ![]() Tomato-EXPEN 1992 |
| ![]() Potato-TXB 1992 |
| ![]() Tomato-EXPIMP 2001 |
Overgo hybridization and physical mapping |
CT101 was used as an overgo probe on plate 1 [well A5]
Plausible BAC Matches: P070N08, P191B01
Overgo Sequences
A sequence
ACTCTGTTGGCGATGAAGGAGTAC
|
B sequence
CCAGAGATTAATGCCCGTACTCCT
|
AB sequence
ACTCTGTTGGCGATGAAGGAGTACGGGCAT
|
Marker sequence
CGGAATTCCTTTTTTTTTTTTTTTTTTTGAATATGAAATGCTGAAAAAAA
ATTCAACCTTGCGTGTTCTTGAACTAAACAATAATCTGATTGACTATTCT GGATTTTCAGGTCTTGCTGGATCACTTCTTGAGAATAAAACTTTACAATC CTTGCATCTCAACGGCAATTATGGTGGTGCTTTAGGGGCTGCAGCACTGG CTAAAGGCTTGGAGAGCAATAAGTCCTTGAGGGAACTTTATTTGCAGGGG AACTCTGTTGGCGATGAAGGAGTACGGGCATTAATCTCTGGCCTGTCTTT GCGTAAAGGGAAACTTGTCTTACTTGACCTTGCCAACAATTCAATTACTG CAAGAGGAGCATTTCATGTTGCCGAATACGTCAAAAAAAGCAAAAGCTTA CTGTGGTTGAATCTCTATATGAATGACATTAAAGATGAGGGAGCTGAAAA GATTGCAGAAGCTTTGAAGGAGAACCGCTCGATAACTAATGTTGATCTTG |
Marker Submitted By |
Name: Molly Jahn
Organization: Cornell University
Organization: Cornell University
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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