SGN Marker C2_At1g61620
SGN-M3879
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species
Synonyms |
Locus associations |
Orthologs in this COSII group |
Species | Copies | Sequence ID | CDS/Edited sequence | Peptide sequence | Predicted introns |
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Coffee | Single | 302818 (SGN) 125016 (CGN) | - | - | - |
Capsicum annuum | Single | SGN-U197742 | - | - | - |
Lycopersicon Combined | Single | SGN-U216182 | - | - | - |
Solanum tuberosum | Single | SGN-U248230 | - | - | - |
Arabidopsis | Single | At1g61620 on TAIR | - | - | - |
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| ![]() Tobacco N. tomentosiformis |
| ![]() Tomato-EXPEN 2000 |
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| ![]() Arabidopsis COSII |
Other PCR data |
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Unigene blast matches for primers |
Overgo hybridization and physical mapping |
C2_At1g61620 was used as an overgo probe on plate 12 [well H2]
Plausible BAC Matches: P183L18, P284H16, P256K09, P024I16, P018N14, P126D19, P286H14, P187L20, P096I05, P283O10, P054D24
Overgo Sequences
A sequence
TGGAAAAGGGAGGAACAGGGTTTG
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B sequence
TTATCTCCATGGGCAGCAAACCCT
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AB sequence
TGGAAAAGGGAGGAACAGGGTTTGCTGCCC
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Marker sequence
ATGCCGCAGAGACACTCGAAGAACAACAACGATCTTGCCTTCTTTACGTA
CGATGAGAAGAGAAAGTTAGGGTATGGAACACAAAAGGAGAGGCTGGGAA AAGATTCAATCAAGCCATTCGATGCTTGTTCCCTTTGTTTAAAACCCTTC ATCGATCCGTTGTGTTGCCAGAAAGGGCATGTCTTTTGCAAAGAATGCAT TCTAGAATGCCTTTTGTCCCAGAAAAAGGATATCCAAAGANNNNNAAGTT AGCTGCTCATACAGGTCAGCAGAAGCAAGAAAAAGAAGAGGAAGAGGAGA GGTTGATGCTGCAGAAAGCCAGGGATCTTGATGCATTTGATCAACAAAAT CATGGTCCAGTTCCGCAGTACAATGATAAGAACTACAACAGAGACAAAAA TGGATTCCATGGAGCTAACAGTGTGAAAGCTACTTCTTATGAGGAGGAAG CACTTAGAACCATGAAAGCATTTTGGCTGCCCTCTGCAACACCAGATGCA CCTGCTAAGGTGGAAGCCCCATCCACTAGCACAACTTGTCCTGAAGGGAG GGAAAAAATTAAGATGAAAAACCTTTTCCCTATACACTTCACTGAAGATA CAAGTGCACAGAAGAAACACAAGTCTCTTGACAAGAGTTTCATATGTCCC AGTTGCAAGGTCACACTAACCAATACTTTGTCACTTGTAGCACTTAATAC TTGTGGACATGTCTTCTGCAAGAAATGTGCAGAAAAATTTGTGGCTGTTG ACAAGGTTTGCGTGGTCTGTGACAAACCATGTAAAAATAGAAATCTGGTG AATGTGGAAAAGGGAGGAACAGGGTTTGCTGCCCATGGAGATAATCTTGA AGCAAAAGACTTCAAACACTTGGGGAGTGGAAGT |
Universal primers for Asterid species |
No additional PCR data found.
Other COSII sequence data |
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree | [View]
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree | [View]
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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