SGN Marker J1

SGN-M4079
KFG markers are Known Function Genes

SynonymsNone
Locus associations  
This marker is associated with the jointless locus.
Mapped locations  
Map: Tomato-EXPEN 2000   
Map version
52 (location: 39113)
Chromosome
11
Position
32.00 cM
Confidence
I
Protocol
CAPS


Tomato-EXPEN 2000
Other PCR data 
PCR data   Exp. ID 35580
Forward primer (5'-3')
CATCCACCGCTATGTACGTG
Digested band sizes (using HinfI)
Solanum lycopersicum LA925: 700
Solanum pennellii LA716: 600
 Mg+2 concentration
1.5mM
Reverse primer (5'-3')
CACCACTCACCCATCTTGTG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 968
Solanum lycopersicum LA925: 968
 Approximate temperature
60°C
  
Overgo hybridization and physical mapping 
J1 was used as an overgo probe on plate 13 [well F6]

Plausible BAC Matches:   P107K14

 Overgo Sequences

A sequence
GTATGTAATTGGTGTATTAATCTC
B sequence
TGGGAGACGAATACATGAGATTAA
AB sequence
GTATGTAATTGGTGTATTAATCTCATGTAT
Marker sequence
CTACTAATTATTATAATTAATTAATGTCTGATTAATGTAAAAGCTAACCC
CAAAAATTTCATATTATGTATGTAATTGGTGTATTAATCTCATGTATTCG
TCTCCCATAGTTTATATAAATATTATTGTTAGTA
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of J1  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D4079 marker 4079
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