SGN Marker TG54

SGN-M413

SynonymsNone
Locus associationsNone
RFLP details 
Insert size
2400
Vector
pUC
Cutting Site
PST1
Drug Resistance
AMP
Image
TG54 RFLP image
Forward sequence
TTTTTTAATGATTCTGTAATGATCCTTTCTAAGCCTGACATCACATTCTCTTACACAGTGCAGGGATTGGTAGGACTGGAACATACTGGG
CAATCCATAATACCATCCAAAGAATATTGGGTGGAGATAAGTCTGCTCTAGATCTAGTTAACACAATAACCATTTTTAGGTCTCAGCGAA
TTGGGATGGTTCAAACCATGGTACAACAGCTTCTCTTCGTTATTGAAATTGTGTAATACAACTAAAGCAGATAACTGTTGGAGTAGTCGA
GGTTTGCAAAAGCTGGCCCGGACACTACTGTCATAAAAATTTTTATATATAGTTGCCCCAGAGTCCTTATTTTTTGTTTAAAAGCTAGTC
AGATGTCTTACATTTTATTCGCTTTACTCTCTTTTTCTCTTTTGGTATTTGTTACACTTACCCCAAGAATCTATACTACTGTGATTCATC
ATTCTTAACTGATCTTTGCTCTTAGGATCTTAAGTACTTGTTGCATGGA
Reverse sequence
GTCTATCATATTCCCTGTAGATGTGCCTTTTTTAATGATTCTGTAATTTATCCTTTCTAAAGCCTGACATCACATTCTCTTACACAGTGC
AGGTATTGGTAGGACTGGAACATACTGTGCAATCCATAATACCATCCAAAGAATATTGGGTGGAGATAAGTCTGCTCTAGATCTAGTTAA
CACAATAACCATTTTTAGGTCTCAGCGAATTGGGATGGTTCAAACCATGGTACAACAGCTTCTCTTCGTTATTGAAATTGTGTAATACAA
CTAAAGCAGATAACTGTTGGAGTAGTCGAGGTTTGCAAAAGCTGGCCCGGACACTACTGTCATAAAAATTTTTATATATAGTTGCCCCAG
TGTCCTTATTTTTTGTTTAAAAGCTAGTCAGATGTCTTACATTTTATTCGCTTTACTCTCTTTTTCTCTTTTGGTATTTGTTACACTTAC
CCCAAGAATCTATACTACTGTGTTTCATCATTCTTAACTAATCTTTGCTCTTAGGTTCTTAAGTACTTG
RFLP sequence matches to unigenes 
Unigenee valueMatch length (bp)Strand
SGN-U1432453.9e-1439 (7.8% of RFLP seq)+
SGN-U1446255.1e-35146 (29.3% of RFLP seq)+
SGN-U1611902.1e-37158 (31.7% of RFLP seq)+
SGN-U1446246.4e-53112 (22.4% of RFLP seq)+
SGN-U1432454.1e-1439 (7.5% of RFLP seq)-
SGN-U1446252.2e-37146 (28.1% of RFLP seq)-
SGN-U1611909e-40158 (30.4% of RFLP seq)-
SGN-U1446241.1e-57112 (21.6% of RFLP seq)-
Mapped locations  
Map: Potato meta-QTL consensus map   
Map version
107 (location: 53352)
Chromosome
6
Position
29.17 cM
Confidence
uncalculated
Protocol
unknown

MQTL_1_Late_blight_6 MQTL_1_Maturity_6 MQTL_2_Late_blight_6 MQTL_2_Maturity_6
Potato meta-QTL consensus map

Map: Tomato-EXPEN 1992   
Map version
28 (location: 9109)
Chromosome
6
Position
37.90 cM
Confidence
I(LOD2)
Protocol
RFLP


Tomato-EXPEN 1992

Map: Potato-TXB 1992   
Map version
27 (location: 9110)
Chromosome
6
Position
19.60 cM
Confidence
I(LOD2)
Protocol
RFLP


Potato-TXB 1992
Overgo hybridization and physical mapping 
TG54 was used as an overgo probe on plate 5 [well A6]

Plausible BAC Matches:   None

 Non-Plausible BAC matches

P094G18,   P144B21,   P032D19,   P147N04

 Overgo Sequences

A sequence
TTACACAGTGCAGGGATTGGTAGG
B sequence
CCCAGTATGTTCCAGTCCTACCAA
AB sequence
TTACACAGTGCAGGGATTGGTAGGACTGGA
Marker sequence
TTTTTTAATGATTCTGTAATGATCCTTTCTAAGCCTGACATCACATTCTC
TTACACAGTGCAGGGATTGGTAGGACTGGAACATACTGGGCAATCCATAA
TACCATCCAAAGAATATTGGGTGGAGATAAGTCTGCTCTAGATCTAGTTA
ACACAATAACCATTTTTAGGTCTCAGCGAATTGGGATGGTTCAAACCATG
GTACAACAGCTTCTCTTCGTTATTGAAATTGTGTAATACAACTAAAGCAG
ATAACTGTTGGAGTAGTCGAGGTTTGCAAAAGCTGGCCCGGACACTACTG
TCATAAAAATTTTTATATATAGTTGCCCCAGAGTCCTTATTTTTTGTTTA
AAAGCTAGTCAGATGTCTTACATTTTATTCGCTTTACTCTCTTTTTCTCT
TTTGGTATTTGTTACACTTACCCCAAGAATCTATACTACTGTGATTCATC
ATTCTTAACTGATCTTTGCTCTTAGGATCTTAAGTACTTGTTGCATGGA
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of TG54  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D413 marker 413
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