SGN Marker TG579

SGN-M419

SynonymsNone
Locus associationsNone
RFLP details 
Insert size
1200
Vector
pGEM4Z
Cutting Site
PST1
Drug Resistance
AMP
Image
TG579 image not available
Forward sequence
CAGTCTCTGCTTCCGAACCTGTACCTCCATATGTTTATTAGTAGCAGCTCTGTAATGCTAATTGGGCTCTGGCATTATGTTGAAAACTTT
ATCTGTTGATTGAAGAAGAAAACTCTCTCTGGACCCTTTTTTTTCTTTTTGGTAGCTGGTTGTAACCACAATCCTTTGGTGCACGGGCTA
AATCATTGTAATGACATACATGGTTTGTCGTTTCGCTTTTGTGAAAGACAAATAAGAGCATACCTTGATCGGAATATTAGCTATGGGTCC
TGAGGGTCTTTTTTCTCTGTCAAGAGGTGACCTCGAGAATCAATCTATGGAAAATTTGTAGTACTGGTGACTAATAAGCTTCCTCTTTGC
CCAAATAAATGCGATGGGATCACTCAATAAGTGAACCTTTTGAGTGATTCATAACACAACACAACCACATTCAATCACTACTCGACGTAC
TATAATAGCTGCCTTGGTTGGAACATTCAGTGTCCTAATGTA
Reverse sequence
AGATACTCTTGCCAGCATCGATGATATATGGTGCGCATCTTACTGGGTGTGGTGAAACATTAATCCTTTGAAGTGCAACACTGAATGTTA
AGATATAGAGGGATGGATGTCGTCATTTTGTCCAAACCATGTATATGTATGATTATATAGATGTAAATTGACCCATTCTGGGTAGTAGTA
CTGATGACTTCAACTGTTCTCTTTAATCTTACATGAAACCCCCCTTCATAATCTTCATAGACATTGCTGGACAGTTAATTGACCAAGGTT
TTCTTGGGATTCACTAGCACCACATGTTCATCTTTAACATACATCAATTTTGAGTTAACGTTGAATTTATATATTGATTAGTCGTTTTCC
TGGTGCCTTCTATATTGTTTAGTTGTATGATTTGTGATCGTATAGGTAGTCTTTACCTTATCAATGCTTAAAAATGAATTCATTCTCTCT
TGCTATGTTTTTATTCGGAGTTGTGTATTGGCCTGCAAGTGACCACACACACACCCCAAAAAAAAAGATG
RFLP sequence matches to unigenes 
Unigenee valueMatch length (bp)Strand
SGN-U1467221.7e-56114 (23.2% of RFLP seq)+
SGN-U1467224.7e-66126 (25.6% of RFLP seq)+
SGN-U1431514e-165292 (56.2% of RFLP seq)-
Mapped locations  
Map: Tomato - Kazusa and SolCAP markers mapped to genome   
Map version
105 (location: 50413)
Chromosome
6
Position
42.00 MB
Confidence
uncalculated
Protocol
unknown


Tomato - Kazusa and SolCAP markers mapped to genome

Map: Kazusa F2-2000 genetic map   
Map version
103 (location: 48345)
Chromosome
6
Position
75.88 cM
Confidence
uncalculated
Protocol
unknown


Kazusa F2-2000 genetic map

Map: Tomato-EXPEN 2000   
Map version
52 (location: 40096)
Chromosome
6
Position
73.00 cM
Confidence
CF(LOD3)
Protocol
RFLP


Tomato-EXPEN 2000

Map: Tomato-EXPEN 1992   
Map version
28 (location: 9126)
Chromosome
6
Position
66.00 cM
Confidence
I
Protocol
RFLP


Tomato-EXPEN 1992
Overgo hybridization and physical mapping 
TG579 was used as an overgo probe on plate 4 [well E2]

Plausible BAC Matches:   None

 Overgo Sequences

A sequence
GGTAGCTGGTTGTAACCACAATCC
B sequence
TAGCCCGTGCACCAAAGGATTGTG
AB sequence
GGTAGCTGGTTGTAACCACAATCCTTTGGT
Marker sequence
CAGTCTCTGCTTCCGAACCTGTACCTCCATATGTTTATTAGTAGCAGCTC
TGTAATGCTAATTGGGCTCTGGCATTATGTTGAAAACTTTATCTGTTGAT
TGAAGAAGAAAACTCTCTCTGGACCCTTTTTTTTCTTTTTGGTAGCTGGT
TGTAACCACAATCCTTTGGTGCACGGGCTAAATCATTGTAATGACATACA
TGGTTTGTCGTTTCGCTTTTGTGAAAGACAAATAAGAGCATACCTTGATC
GGAATATTAGCTATGGGTCCTGAGGGTCTTTTTTCTCTGTCAAGAGGTGA
CCTCGAGAATCAATCTATGGAAAATTTGTAGTACTGGTGACTAATAAGCT
TCCTCTTTGCCCAAATAAATGCGATGGGATCACTCAATAAGTGAACCTTT
TGAGTGATTCATAACACAACACAACCACATTCAATCACTACTCGACGTAC
TATAATAGCTGCCTTGGTTGGAACATTCAGTGTCCTAATGTA
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of TG579  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D419 marker 419
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