SGN Marker CT115

SGN-M424

SynonymsNone
Locus associationsNone
RFLP details 
Insert size
1000
Vector
pBLUESC
Cutting Site
EcoR1
Drug Resistance
AMP
Image
Forward sequence
CTTTTTTTTTTCTTCTTCCAAAAGTTTCTATTATGGCGGATAGAGTATACCCAGCTGCTAAACCAGCTGTTCCTAATGGCACTGCTGCTC
CGGCTCCCGCTCCTGCCGCCGCCGCCGCCGCCAACGGCGGATCTAATCAGACGTTTCCGGCGAACAAAGCTCAACTTTACAACGCTGCTA
GACCTACTTACCGTCCTATGCCGCCTCCCCGCCGTAAACACCGACGGCAGCTGCTGTTGTTGTTGTTGGCCTGTTTATTACCTGATTCAT
AATCACTATTGGTTCTACTTGCTGCAATTGCCGGTGCTATTTTCTGGGTACTTTACCGTCCTCAGAGGCCTTCCTTCTCTGTTTCTACTC
TTCGAGTCTCTCAATTAAATCTTACTT
Reverse sequence
not available
RFLP sequence matches to unigenes 
Unigenee valueMatch length (bp)Strand
SGN-U1453931.8e-4693 (24.0% of RFLP seq)+
SGN-U1453933e-125265 (68.5% of RFLP seq)+
Mapped locations  
Map: Tomato-LXCHM 2007   
Map version
68 (location: 42949)
Chromosome
3
Position
39.20 cM
Confidence
uncalculated
Protocol
CAPS


Tomato-LXCHM 2007

PCR data   Exp. ID 43949
Forward primer (5'-3')
CAAGCAAAGAAACAGGGTAAAG
Accessions and product sizes
Approximate temperature
58°C
Reverse primer (5'-3')
CCTGGACGATTCTGCGATTTC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
Unknown
   Enzymes
  

Map: Eggplant-COSII   
Map version
63 (location: 42294)
Chromosome
3
Position
151.80 cM
Confidence
F(LOD3)
Protocol
RFLP


Eggplant-COSII

Map: Eggplant-LXM 2002   
Map version
29 (location: 9136)
Chromosome
3
Position
159.00 cM
Confidence
F(LOD3)
Protocol
RFLP


Eggplant-LXM 2002

Map: Tomato-EXPEN 1992   
Map version
28 (location: 9135)
Chromosome
3
Position
118.90 cM
Confidence
I(LOD2)
Protocol
RFLP


Tomato-EXPEN 1992
Overgo hybridization and physical mapping 
CT115 was used as an overgo probe on plate 2 [well E6]

Plausible BAC Matches:   None

 Overgo Sequences

A sequence
GTATACCCAGCTGCTAAACCAGCT
B sequence
CAGTGCCATTAGGAACAGCTGGTT
AB sequence
GTATACCCAGCTGCTAAACCAGCTGTTCCT
Marker sequence
CTTTTTTTTTTCTTCTTCCAAAAGTTTCTATTATGGCGGATAGAGTATAC
CCAGCTGCTAAACCAGCTGTTCCTAATGGCACTGCTGCTCCGGCTCCCGC
TCCTGCCGCCGCCGCCGCCGCCAACGGCGGATCTAATCAGACGTTTCCGG
CGAACAAAGCTCAACTTTACAACGCTGCTAGACCTACTTACCGTCCTATG
CCGCCTCCCCGCCGTAAACACCGACGGCAGCTGCTGTTGTTGTTGTTGGC
CTGTTTATTACCTGATTCATAATCACTATTGGTTCTACTTGCTGCAATTG
CCGGTGCTATTTTCTGGGTACTTTACCGTCCTCAGAGGCCTTCCTTCTCT
GTTTCTACTCTTCGAGTCTCTCAATTAAATCTTACTT
Genomic location of CT115  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D424 marker 424
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