SGN Marker CT116

SGN-M426

SynonymsNone
Locus associationsNone
RFLP details 
Insert size
1400
Vector
pBLUESC
Cutting Site
EcoR1
Drug Resistance
AMP
Image
CT116 image not available
Forward sequence
AGAGGTGTCATTTGGCGCATTCATGTCCATGTAAAATTATTTTACGAAACAAAAAAAGGAATTCGAAGCTAGAGGTGTCAGAAAAGTTAC
CACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGCGACGTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGC
AGAATTCCTTTTTTTTTTTTTTTTAAAAGGGAACAAGGTTGATCTGTTAATACAAAAGAAAATGATTGTCATCCATCACTTGATCTAAAG
TCCACTGGACAAAAACATCTAAAATCTGGAGGAACAAAGCTTAAAACAGAGCAGACATAAAGAGTAACTCCATTTGCGAGATTGTCACAA
GGCAGATTCAGGTTCCAATTGCAACTAGCTACAAGTGCTGGGTAGTGGATGACCAAAGAGAATTGGGAGGGTAGATTGCTTAGCTTCCAG
CTGTAGTTGGCACTGCACGAGGCTTCGAATCTTCAGCCTTTTCGTGTTCCTTGTTAA
Reverse sequence
TTTTTTTTTTTTTCTCCAGATTTCGAAGAGAGGAAGAAGCAATAATGGATGTAATCAAATCTCAGCAAATATCTTCGAGGCCGATTGAGA
AGGTAATTGTTCACCCGCTTGTGCTTTTGAGCATCGTAGACCACTACAATAGAGTTGCAAGAGACACAAGGAAACGTGTTGTTGGGGTTT
TGCTTGGAACTTCGTTTAAAGGCACTGTTGATGTTACTAATAGCTATGCAGTGCCCTTTGAGGAGGAGGAGAGGGACCCTAGTATCTGGT
TTCTTGACCATAACTATCATGAATCGATGTTTTCCATGTTCCGTAGGATAAACGCAAAGGAGCATGTTGTTGGTTGGTATAGCACTGGTC
CCAAACTTCGGGAAAATGACCTCAACATTCATGGGCTTTTAATGACTACGTCCCTACTCCAGTCTTGGTTATAATTGATGTCCAGCCTAA
GGAGCTAGGAATACCAACTAAGGCGTACTATGCAGTTGAGGAAGTTAAAGAGAATGCAACTCAGAAAAGCCAGA
RFLP sequence matches to unigenes 
Unigenee valueMatch length (bp)Strand
SGN-U1461781.1e-2050 (9.9% of RFLP seq)+
SGN-U1613093.2e-70181 (35.7% of RFLP seq)+
SGN-U1449401e-171303 (59.8% of RFLP seq)+
SGN-U1695733.7e-42171 (32.6% of RFLP seq)-
SGN-U144940512 (97.7% of RFLP seq)-
Mapped locations  
Map: Tomato-EXPEN 1992   
Map version
28 (location: 9138)
Chromosome
1
Position
8.90 cM
Confidence
I(LOD2)
Protocol
RFLP


Tomato-EXPEN 1992
Overgo hybridization and physical mapping 
CT116 was used as an overgo probe on plate 3 [well G1]

Plausible BAC Matches:   None

 Non-Plausible BAC matches

P174B02,   P112E07,   P327H24,   P042G05,   P246H06,   P134G24,   P195N12,   P281B05,   P018I11,   P310O16,   P036P08,   P030M19,   P225N15,   P216C19,   P319N16,   P160K24,   P220E21,   P121H24,   P335P07,   P158K23,   P332K11,   P258G14,   P142A15,   P077J19,   P016M24,   P109L03,   P025N04,   P288D05,   P174A02,   P169I23,   P114M14,   P250N12,   P011L02,   P108N20,   P002G03,   P175L14,   P029E01,   P330M20,   P027A13,   P140L10,   P030C02,   P331H22,   P100J15,   P326C11,   P021A08,   P204N05,   P174C19,   P067D12,   P014L06,   P288C05,   P096D12,   P226H16,   P099F01,   P204O14,   P118G07,   P294B12,   P048D19,   P145O15,   P323A18,   P182D04

 Overgo Sequences

A sequence
GCGACGTTGCTTTTTGATCCTTCG
B sequence
TAGGAAGAGCCGACATCGAAGGAT
AB sequence
GCGACGTTGCTTTTTGATCCTTCGATGTCG
Marker sequence
AGAGGTGTCATTTGGCGCATTCATGTCCATGTAAAATTATTTTACGAAAC
AAAAAAAGGAATTCGAAGCTAGAGGTGTCAGAAAAGTTACCACAGGGATA
ACTGGCTTGTGGCAGCCAAGCGTTCATAGCGACGTTGCTTTTTGATCCTT
CGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCCTTTTTTTTTTTT
TTTTAAAAGGGAACAAGGTTGATCTGTTAATACAAAAGAAAATGATTGTC
ATCCATCACTTGATCTAAAGTCCACTGGACAAAAACATCTAAAATCTGGA
GGAACAAAGCTTAAAACAGAGCAGACATAAAGAGTAACTCCATTTGCGAG
ATTGTCACAAGGCAGATTCAGGTTCCAATTGCAACTAGCTACAAGTGCTG
GGTAGTGGATGACCAAAGAGAATTGGGAGGGTAGATTGCTTAGCTTCCAG
CTGTAGTTGGCACTGCACGAGGCTTCGAATCTTCAGCCTTTTCGTGTTCC
TTGTTAA
Genomic location of CT116  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D426 marker 426
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