SGN Marker CT128

SGN-M455

SynonymsNone
Locus associationsNone
RFLP details 
Insert size
700
Vector
pBLUESC
Cutting Site
EcoR1
Drug Resistance
AMP
Image
Forward sequence
CTTTTTTTTTTTTTCAACACAAACAAAATTTCATTATATTGTCAGGTAGCACACTACATCTTTACACTGTCATCAAACGACCAGAGACTT
GAGAACGTTTTAAGAGATTCATTTTCCGGGGACAAAGTTTGTGGCGAAAGCCCAGGCATTGTTGTTTACGGGGTCTGCAAGGTGGTCAGC
AAGGTTCTCCAATGGACCCTTTCCGGTGACAATAGCTTGAACAAAGAATCCAAACATAGAGAACATAGCAAGTCTACCGTTCTTGATCTC
CTTTACCTTGAGCTCAGCAAATGCCTCTGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTGCCACCAGGGTAGAGTGGGTCGACAACCTC
ACCAAGAGGTCCACCAGCAATACGGTATCCCTCAACAGCTCCCATCAACACAACTTGGCAAGCCCAGATGGCCAAGATGCTTTGTGCATG
GACCAAGCTTGGGTTGCCCAAGTAGTCAA
Reverse sequence
CTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGAT
GGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCG
GATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCC
AAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGC
TTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCT
ATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCA
RFLP sequence matches to unigenes 
Unigenee valueMatch length (bp)Strand
SGN-U1607693.4e-0532 (6.7% of RFLP seq)+
SGN-U1437853.4e-0532 (6.7% of RFLP seq)+
SGN-U1638008.5e-0645 (9.4% of RFLP seq)+
SGN-U1556011.4e-0736 (7.5% of RFLP seq)+
SGN-U1607373.5e-0833 (6.9% of RFLP seq)+
SGN-U1437413.5e-0833 (6.9% of RFLP seq)+
SGN-U1437403.5e-0833 (6.9% of RFLP seq)+
SGN-U1555212.5e-1858 (12.1% of RFLP seq)+
SGN-U1637491.6e-1960 (12.5% of RFLP seq)+
SGN-U1434676.6e-2280 (16.7% of RFLP seq)+
SGN-U1605596.6e-2280 (16.7% of RFLP seq)+
SGN-U1605601.1e-2391 (19.0% of RFLP seq)+
SGN-U1604711.7e-25130 (27.1% of RFLP seq)+
SGN-U1434684.4e-2691 (19.0% of RFLP seq)+
SGN-U1433342.8e-27217 (45.3% of RFLP seq)+
SGN-U1638031.9e-3196 (20.0% of RFLP seq)+
SGN-U1637631.9e-3180 (16.7% of RFLP seq)+
SGN-U1637474.7e-32105 (21.9% of RFLP seq)+
SGN-U1556014.7e-32105 (21.9% of RFLP seq)+
SGN-U1638038.2e-40102 (21.3% of RFLP seq)+
SGN-U1433355.3e-41208 (43.4% of RFLP seq)+
SGN-U1638071.3e-41117 (24.4% of RFLP seq)+
SGN-U1638058.6e-43107 (22.3% of RFLP seq)+
SGN-U1637478.6e-43106 (22.1% of RFLP seq)+
SGN-U1433332.2e-43220 (45.9% of RFLP seq)+
SGN-U1637603.5e-45115 (24.0% of RFLP seq)+
SGN-U1556011.4e-47183 (38.2% of RFLP seq)+
SGN-U1637612.8e-64146 (30.5% of RFLP seq)+
SGN-U1637491.4e-84181 (37.8% of RFLP seq)+
SGN-U1637551.5e-87230 (48.0% of RFLP seq)+
SGN-U1637515e-103364 (76.0% of RFLP seq)+
SGN-U1638042e-105284 (59.3% of RFLP seq)+
SGN-U1638013e-107275 (57.4% of RFLP seq)+
SGN-U1556022e-136372 (77.7% of RFLP seq)+
SGN-U1555971e-140367 (76.6% of RFLP seq)+
SGN-U1555225e-146372 (77.7% of RFLP seq)+
SGN-U1638022e-151373 (77.9% of RFLP seq)+
SGN-U1555206e-161373 (77.9% of RFLP seq)+
SGN-U1637461e-162300 (62.6% of RFLP seq)+
SGN-U1555294e-168381 (79.5% of RFLP seq)+
SGN-U1555192e-170425 (88.7% of RFLP seq)+
SGN-U1556041e-174372 (77.7% of RFLP seq)+
SGN-U1555183e-175373 (77.9% of RFLP seq)+
SGN-U1556033e-175389 (81.2% of RFLP seq)+
SGN-U1555997e-176382 (79.7% of RFLP seq)+
SGN-U163753447 (93.3% of RFLP seq)+
SGN-U155600464 (96.9% of RFLP seq)+
SGN-U1437853.5e-0532 (6.5% of RFLP seq)-
SGN-U1607693.5e-0532 (6.5% of RFLP seq)-
SGN-U1556011.4e-0736 (7.3% of RFLP seq)-
SGN-U1604713.6e-0845 (9.1% of RFLP seq)-
SGN-U1437413.6e-0833 (6.7% of RFLP seq)-
SGN-U1437403.6e-0833 (6.7% of RFLP seq)-
SGN-U1607373.6e-0833 (6.7% of RFLP seq)-
SGN-U1637631.5e-1049 (9.9% of RFLP seq)-
SGN-U1434689.5e-1259 (11.9% of RFLP seq)-
SGN-U1605592.4e-1280 (16.2% of RFLP seq)-
SGN-U1434673.9e-1483 (16.8% of RFLP seq)-
SGN-U1433332.5e-15113 (22.8% of RFLP seq)-
SGN-U1556011.6e-16103 (20.8% of RFLP seq)-
SGN-U1433341.7e-19132 (26.7% of RFLP seq)-
SGN-U1605596.8e-2280 (16.2% of RFLP seq)-
SGN-U1434676.8e-2280 (16.2% of RFLP seq)-
SGN-U1605601.1e-2391 (18.4% of RFLP seq)-
SGN-U1433341.1e-23275 (55.6% of RFLP seq)-
SGN-U1433351.1e-23123 (24.8% of RFLP seq)-
SGN-U1433361.1e-23275 (55.6% of RFLP seq)-
SGN-U1434684.5e-2691 (18.4% of RFLP seq)-
SGN-U1433334.5e-26135 (27.3% of RFLP seq)-
SGN-U1556011.9e-2891 (18.4% of RFLP seq)-
SGN-U1556013e-30106 (21.4% of RFLP seq)-
SGN-U1637633.2e-3696 (19.4% of RFLP seq)-
SGN-U1637478.9e-43106 (21.4% of RFLP seq)-
SGN-U1637502.2e-43220 (44.4% of RFLP seq)-
SGN-U1637551.5e-50144 (29.1% of RFLP seq)-
SGN-U1637614.4e-60147 (29.7% of RFLP seq)-
SGN-U1637604.9e-69255 (51.5% of RFLP seq)-
SGN-U1638048.6e-77176 (35.6% of RFLP seq)-
SGN-U1637478.6e-77312 (63.0% of RFLP seq)-
SGN-U1555215.5e-78266 (53.7% of RFLP seq)-
SGN-U1638053.5e-79192 (38.8% of RFLP seq)-
SGN-U1637463.6e-82153 (30.9% of RFLP seq)-
SGN-U1637616.1e-87221 (44.6% of RFLP seq)-
SGN-U1637511.7e-93364 (73.5% of RFLP seq)-
SGN-U1638022e-133339 (68.5% of RFLP seq)-
SGN-U1638031e-134309 (62.4% of RFLP seq)-
SGN-U1638015e-146484 (97.8% of RFLP seq)-
SGN-U1637539e-151276 (55.8% of RFLP seq)-
SGN-U1556022e-151493 (99.6% of RFLP seq)-
SGN-U1555979e-157494 (99.8% of RFLP seq)-
SGN-U1556043e-163377 (76.2% of RFLP seq)-
SGN-U1555222e-176495 (100.0% of RFLP seq)-
SGN-U1637495e-180389 (78.6% of RFLP seq)-
SGN-U155529445 (89.9% of RFLP seq)-
SGN-U155599401 (81.0% of RFLP seq)-
SGN-U155520495 (100.0% of RFLP seq)-
SGN-U155518495 (100.0% of RFLP seq)-
SGN-U155519480 (97.0% of RFLP seq)-
SGN-U155600467 (94.3% of RFLP seq)-
SGN-U155603495 (100.0% of RFLP seq)-
Mapped locations  
Map: Tomato QTL map   
Map version
137 (location: 53760)
Chromosome
2
Position
32.30 cM
Confidence
uncalculated
Protocol
RFLP

Dry_matter_weight_dmw2_1 Titratable_acidity_ta2_1 Eugenol_content_eug2_1 Fruit_weight_fw2_1Soluble_solid_content_ssc2_1 Sugar_content_suc2_1 3_Methylthio_propanal_content_mta2_1 Hex_3_en_1_ol_content__x3o2_1 Fruit_diameter_fd2_1 Color_a_a2_1 Dry_matter_weight_dmw2_2 Sugar_content_suc2_2 Soluble_solid_content_ssc2_2 Color_L_L2_1 Fruit_weight_fw2_2Titratable_acidity_ta2_2 Dry_matter_weight_dmw2_3 Color_b_b2_1Fruit_diameter_fd2_2 Elasticity_ela2_1 Carotene_content_car2_1 2_Isobutylthiazole_content_ibt2_1
Tomato QTL map

Map: Pepper-COSII   
Map version
58 (location: 41573)
Chromosome
2
Position
59.40 cM
Confidence
F(LOD3)
Protocol
RFLP


Pepper-COSII

Map: Pepper-FAO3   
Map version
31 (location: 9208)
Chromosome
2
Position
76.74 cM
Confidence
uncalculated
Protocol
RFLP


Pepper-FAO3

Map: Tomato-EXPEN 1992   
Map version
28 (location: 9207)
Chromosome
2
Position
44.80 cM
Confidence
I(LOD2)
Protocol
RFLP
Subscript
A


Tomato-EXPEN 1992
Overgo hybridization and physical mapping 
CT128 was used as an overgo probe on plate 15 [well G10]

Plausible BAC Matches:   None

 Overgo Sequences

A sequence
CAAGGTTCTCCAATGGACCCTTTC
B sequence
CAAGCTATTGTCACCGGAAAGGGT
AB sequence
CAAGGTTCTCCAATGGACCCTTTCCGGTGA
Marker sequence
CTTTTTTTTTTTTTCAACACAAACAAAATTTCATTATATTGTCAGGTAGC
ACACTACATCTTTACACTGTCATCAAACGACCAGAGACTTGAGAACGTTT
TAAGAGATTCATTTTCCGGGGACAAAGTTTGTGGCGAAAGCCCAGGCATT
GTTGTTTACGGGGTCTGCAAGGTGGTCAGCAAGGTTCTCCAATGGACCCT
TTCCGGTGACAATAGCTTGAACAAAGAATCCAAACATAGAGAACATAGCA
AGTCTACCGTTCTTGATCTCCTTTACCTTGAGCTCAGCAAATGCCTCTGG
GTCTTCAGCAAGGCCTAATGGGTCGAAGCTGCCACCAGGGTAGAGTGGGT
CGACAACCTCACCAAGAGGTCCACCAGCAATACGGTATCCCTCAACAGCT
CCCATCAACACAACTTGGCAAGCCCAGATGGCCAAGATGCTTTGTGCATG
GACCAAGCTTGGGTTGCCCAAGTAGTCAA
Marker Submitted By 
Name: Molly Jahn
Organization: Cornell University
Genomic location of CT128  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D455 marker 455
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