SGN Marker Fer

SGN-M4679
KFG markers are Known Function Genes

SynonymsNone
Locus associations  
This marker is associated with the fe inefficient locus.
Mapped locations  
Map: Tomato-EXPEN 2000   
Map version
52 (location: 39094)
Chromosome
6
Position
25.00 cM
Confidence
CF(LOD3)
Protocol
CAPS


Tomato-EXPEN 2000
Other PCR data 
PCR data   Exp. ID 35576
Forward primer (5'-3')
CGGCTACCACCAAAATGACT
Digested band sizes (using MspI)
Solanum pennellii LA716: 750+375
Solanum lycopersicum LA925: 1250
 Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ACCAACGGAGATGTCTCGAA
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 1250
Solanum lycopersicum LA925: 1250
 Approximate temperature
55°C
  
Overgo hybridization and physical mapping 
Fer was used as an overgo probe on plate 13 [well F2]

Plausible BAC Matches:   P311N03,   P048H12,   P107C20,   P091I08,   P208D08,   P122K02,   P312M23,   P076C23,   P216L02,   P076N05,   P069C09,   P287H15,   P232A14,   P324L01,   P052L07,   P023B17,   P005M05,   P245P05

 Overgo Sequences

A sequence
AACGGCTACCACCAAAATGACTCC
B sequence
CGTGCCTTTGCTTGTTGGAGTCAT
AB sequence
AACGGCTACCACCAAAATGACTCCAACAAG
Marker sequence
GGGGAAAAATAAAAAAAAAATGGAGAGTGGTAATGCATCAATGGAAAATA
ATAATGTTAATGATATTGGGCTTATTAATTTCTTGGATGAGGATAATTTT
GAACAATTCATTGAGCTTATTAGGGGTGAAACTGCTGATCCTATTGTAAA
TTTTTGCCCAAACTATGATTGTGAACATATGACAGGTTGTTTTTCCGCAG
CCAATGCCCAATTTGAGCCAATATTATCGTCGATGGATTTCTATGATACA
ACATTGCCAGATCCTATTTCGCTATATAACTGCGAAATCAAGCTGGATAA
TAATGATGATGAAGACGATGATGAATCTTCTGGCACAACGGCTACCACCA
AAATGACTCCAACAAGCAAAGGCACGAGGACTGACCGGTCCAGAACTTTG
ATTTCGGAGCGCAAAAGGAGAGGAAGAATGAAGGAAAAGCTTTACGCTTT
GCGATCCTTAGTTCCTAATATCACAAAGATGGATAAAGCCTCCATCATTG
GAGATGCAATATTATACGTACAAGGACTACAAACCAAAGCAAAGAAACTT
AAAGTTGAAATAGCAGAGTTTGAGTCATCAAGTGGAATATTTCAAAATGC
AAAGAAAATGAATTTCACAACCTATTATCCAGCAATCAAGAGGATAACAA
AGATGGACATTAATCAAGTAGAAGAAAAAGGATTTTACGTGAGATTAATT
TGCAACAAAGGGCGACACATTGCAGCTTCTCTTTTCAAAGCTCTTGAGTC
TCTCAATGGATTCAATGTTCAAACTTCCAACTTGGCTACTTCTACCAATG
ATTACATTTTCACCTTCACTCTTTATGTGAGAGAATGTCATGAGGTGGAC
ATAAACTTTGGCAATTTGAAGCTATGGATAGCTAGTGCTTTTCTTAATCA
AGGGTTTGACTTCGAGACATCTCCGTTGGTCTAATATCATGTTATTATTG
TAACTTTCTAAAATACTGAACTATATTTAATTTGTATTATCATTTAGTAC
ATTATCCAAACTAAACGGGACTTTTACTTAATGAAGAGAAAACTTGTTTT
GATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of Fer  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D4679 marker 4679
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