Sol Genomics Network

SGN Marker C2_At1g44760

SGN-M4713
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	304223 (SGN) 119913 (CGN)	-	-	-
Capsicum annuum	Single	SGN-U202500	-	-	-
Lycopersicon Combined	Single	SGN-U241856	-	-	-
Solanum tuberosum	Single	SGN-U251397	-	-	-
Arabidopsis	Single	At1g44760 on TAIR	-	-	-

Mapped locations

Map: Tobacco N. tomentosiformis
Map version 91 (location: 46585)
Chromosome 6
Position 63.50 cM
Confidence F(LOD3)
Protocol CAPS

Tobacco N. tomentosiformis

Map: Tobacco N. acuminata
Map version 89 (location: 46440)
Chromosome 6
Position 65.30 cM
Confidence F(LOD3)
Protocol CAPS

Tobacco N. acuminata

Map: Pepper-COSII
Map version 58 (location: 41328)
Chromosome 6
Position 62.20 cM
Confidence F(LOD3)
Protocol CAPS

Pepper-COSII

PCR data Exp. ID 43304

Forward primer (5'-3')

TTCTTCATCTGCTGCTCATCTTGC

Accessions and product sizes

Approximate temperature

58°C

Reverse primer (5'-3')

AGAGGGTTTTTTCTGACCCAAGAC

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

Unknown

Enzymes

Map: Tomato-EXPEN 2000
Map version 52 (location: 38180)
Chromosome 6
Position 39.50 cM
Confidence I
Protocol CAPS

Tomato-EXPEN 2000

PCR data Exp. ID 39461

Forward primer (5'-3')

TTCTTCATCTGCTGCTCATCTTGC

Accessions and product sizes

Solanum pennellii TA56

750

Solanum lycopersicum TA209

750

Approximate temperature

55°C

Reverse primer (5'-3')

AGAGGGTTTTTTCTGACCCAAGAC

Digested band sizes (using amplicon difference)

Solanum lycopersicum TA209

520

Solanum pennellii TA56

300

Mg⁺² concentration

1.5mM

Enzymes

Map: Arabidopsis COSII
Map version 44 (location: 25214)
Chromosome 1
Position 16.90 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 10207
Forward primer (5'-3') TTCTTCATCTGCTGCTCATCTTGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGAGGGTTTTTTCTGACCCAAGAC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 750	Approximate temperature 55°C

PCR data Exp. ID 10208
Forward primer (5'-3') TTCTTCATCTGCTGCTCATCTTGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGAGGGTTTTTTCTGACCCAAGAC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 750	Approximate temperature 55°C

PCR data Exp. ID 10209
Forward primer (5'-3') TTCTTCATCTGCTGCTCATCTTGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGAGGGTTTTTTCTGACCCAAGAC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 750	Approximate temperature 55°C

PCR data Exp. ID 12636
Forward primer (5'-3') TTCTTCATCTGCTGCTCATCTTGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGAGGGTTTTTTCTGACCCAAGAC	Enzymes
Accessions and product sizes Solanum tuberosum TA3427: 800	Approximate temperature 55°C

PCR data Exp. ID 12637
Forward primer (5'-3') TTCTTCATCTGCTGCTCATCTTGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGAGGGTTTTTTCTGACCCAAGAC	Enzymes
Accessions and product sizes Solanum melongena TA2986: 750	Approximate temperature 55°C

PCR data Exp. ID 12638
Forward primer (5'-3') TTCTTCATCTGCTGCTCATCTTGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGAGGGTTTTTTCTGACCCAAGAC	Enzymes
Accessions and product sizes Capsicum annuum TA3428: 850	Approximate temperature 55°C

PCR data Exp. ID 12639
Forward primer (5'-3') TTCTTCATCTGCTGCTCATCTTGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGAGGGTTTTTTCTGACCCAAGAC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 1000	Approximate temperature 55°C

PCR data Exp. ID 12640
Forward primer (5'-3') TTCTTCATCTGCTGCTCATCTTGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGAGGGTTTTTTCTGACCCAAGAC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 1000	Approximate temperature 55°C

PCR data Exp. ID 12641
Forward primer (5'-3') TTCTTCATCTGCTGCTCATCTTGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGAGGGTTTTTTCTGACCCAAGAC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 1200	Approximate temperature 55°C

PCR data Exp. ID 12642
Forward primer (5'-3') TTCTTCATCTGCTGCTCATCTTGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGAGGGTTTTTTCTGACCCAAGAC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 1100	Approximate temperature 55°C

PCR data Exp. ID 12643
Forward primer (5'-3') TTCTTCATCTGCTGCTCATCTTGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGAGGGTTTTTTCTGACCCAAGAC	Enzymes
Accessions and product sizes Nicotiana plumbaginifolia TA3354: 1200	Approximate temperature 55°C

PCR data Exp. ID 12644
Forward primer (5'-3') TTCTTCATCTGCTGCTCATCTTGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGAGGGTTTTTTCTGACCCAAGAC	Enzymes
Accessions and product sizes Physalis TA1367: 700	Approximate temperature 55°C

PCR data Exp. ID 12645
Forward primer (5'-3') TTCTTCATCTGCTGCTCATCTTGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGAGGGTTTTTTCTGACCCAAGAC	Enzymes
Accessions and product sizes Petunia axillaris TA3309: 800	Approximate temperature 55°C

PCR data Exp. ID 12646
Forward primer (5'-3') TTCTTCATCTGCTGCTCATCTTGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGAGGGTTTTTTCTGACCCAAGAC	Enzymes
Accessions and product sizes Petunia axillaris subsp. parodii TA3310: 1100	Approximate temperature 55°C

PCR data Exp. ID 12647
Forward primer (5'-3') TTCTTCATCTGCTGCTCATCTTGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGAGGGTTTTTTCTGACCCAAGAC	Enzymes
Accessions and product sizes Petunia x hybrida TA3311: 1100	Approximate temperature 55°C

PCR data Exp. ID 32770
Forward primer (5'-3') TTCTTCATCTGCTGCTCATCTTGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGAGGGTTTTTTCTGACCCAAGAC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 1000	Approximate temperature 55°C

PCR data Exp. ID 32771
Forward primer (5'-3') TTCTTCATCTGCTGCTCATCTTGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGAGGGTTTTTTCTGACCCAAGAC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 1000	Approximate temperature 55°C

PCR data Exp. ID 32772
Forward primer (5'-3') TTCTTCATCTGCTGCTCATCTTGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGAGGGTTTTTTCTGACCCAAGAC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 1200	Approximate temperature 55°C

PCR data Exp. ID 32773
Forward primer (5'-3') TTCTTCATCTGCTGCTCATCTTGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGAGGGTTTTTTCTGACCCAAGAC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 1100	Approximate temperature 55°C

PCR data Exp. ID 10210
Forward primer (5'-3') TTCTTCATCTGCTGCTCATCTTGC	Digested band sizes (using MspI) Solanum lycopersicum LA925: 520 Solanum pennellii LA716: 300	Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGAGGGTTTTTTCTGACCCAAGAC	Enzymes All possible enzymes for pennellii and and lycopersicum: MspI, RsaI
Accessions and product sizes Solanum lycopersicum LA925: 750 Solanum pennellii LA716: 750	Approximate temperature 55°C