Sol Genomics Network

SGN Marker C2_At5g09880

SGN-M4731
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	299838 (SGN) 125338 (CGN)	-	-	-
Capsicum annuum	Single	SGN-U205454	-	-	-
Lycopersicon Combined	Single	SGN-U220137	-	-	-
Solanum tuberosum	Multiple	SGN-U246741	-	-	-
Arabidopsis	Single	At5g09880 on TAIR	-	-	-

Mapped locations

Map: Tomato - Kazusa and SolCAP markers mapped to genome
Map version 105 (location: 49290)
Chromosome 11
Position 0.16 MB
Confidence uncalculated
Protocol CAPS

Tomato - Kazusa and SolCAP markers mapped to genome

Map: Tobacco N. tomentosiformis
Map version 91 (location: 46746)
Chromosome 5
Position 68.10 cM
Confidence F(LOD3)
Protocol CAPS

Tobacco N. tomentosiformis

Map: Pepper-COSII
Map version 58 (location: 41509)
Chromosome 12
Position 50.40 cM
Confidence F(LOD3)
Protocol CAPS

Pepper-COSII

PCR data Exp. ID 43485

Forward primer (5'-3')

AAAACATGTTTGATCCTGCAACTGAG

Accessions and product sizes

Approximate temperature

63°C

Reverse primer (5'-3')

CCTTTGAACTTGGCATCATATTCAT

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

Unknown

Enzymes

Map: Tomato-EXPEN 2000
Map version 52 (location: 38769)
Chromosome 11
Position 0.00 cM
Confidence I
Protocol CAPS

Tomato-EXPEN 2000

PCR data Exp. ID 39915

Forward primer (5'-3')

AGGGTCAAGCATATCCATGTGGAC

Accessions and product sizes

Solanum lycopersicum TA209

200

Solanum pennellii TA56

200

Approximate temperature

55°C

Reverse primer (5'-3')

TCTCTTGTGCATGGCTTGTTGAGC

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

1.5mM

Enzymes

Map: Arabidopsis COSII
Map version 44 (location: 27088)
Chromosome 5
Position 3.08 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 11673
Forward primer (5'-3') AGGGTCAAGCATATCCATGTGGAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCTCTTGTGCATGGCTTGTTGAGC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 550	Approximate temperature 55°C

PCR data Exp. ID 11674
Forward primer (5'-3') AGGGTCAAGCATATCCATGTGGAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCTCTTGTGCATGGCTTGTTGAGC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 300	Approximate temperature 55°C

PCR data Exp. ID 11675
Forward primer (5'-3') AGGGTCAAGCATATCCATGTGGAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCTCTTGTGCATGGCTTGTTGAGC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 300	Approximate temperature 55°C

PCR data Exp. ID 13668
Forward primer (5'-3') AGGGTCAAGCATATCCATGTGGAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCTCTTGTGCATGGCTTGTTGAGC	Enzymes
Accessions and product sizes Solanum tuberosum TA3427: 550	Approximate temperature 55°C

PCR data Exp. ID 13669
Forward primer (5'-3') AGGGTCAAGCATATCCATGTGGAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCTCTTGTGCATGGCTTGTTGAGC	Enzymes
Accessions and product sizes Capsicum annuum TA3428: 500	Approximate temperature 55°C

PCR data Exp. ID 13670
Forward primer (5'-3') AGGGTCAAGCATATCCATGTGGAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCTCTTGTGCATGGCTTGTTGAGC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 550	Approximate temperature 55°C

PCR data Exp. ID 13671
Forward primer (5'-3') AGGGTCAAGCATATCCATGTGGAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCTCTTGTGCATGGCTTGTTGAGC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 600	Approximate temperature 55°C

PCR data Exp. ID 13672
Forward primer (5'-3') AGGGTCAAGCATATCCATGTGGAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCTCTTGTGCATGGCTTGTTGAGC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 550	Approximate temperature 55°C

PCR data Exp. ID 13673
Forward primer (5'-3') AGGGTCAAGCATATCCATGTGGAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCTCTTGTGCATGGCTTGTTGAGC	Enzymes
Accessions and product sizes Nicotiana plumbaginifolia TA3354: 550	Approximate temperature 55°C

PCR data Exp. ID 13674
Forward primer (5'-3') AGGGTCAAGCATATCCATGTGGAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCTCTTGTGCATGGCTTGTTGAGC	Enzymes
Accessions and product sizes Physalis TA1367: 550	Approximate temperature 55°C

PCR data Exp. ID 13675
Forward primer (5'-3') AGGGTCAAGCATATCCATGTGGAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCTCTTGTGCATGGCTTGTTGAGC	Enzymes
Accessions and product sizes Petunia axillaris TA3309: Multiple	Approximate temperature 55°C

PCR data Exp. ID 13676
Forward primer (5'-3') AGGGTCAAGCATATCCATGTGGAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCTCTTGTGCATGGCTTGTTGAGC	Enzymes
Accessions and product sizes Petunia x hybrida TA3311: 500	Approximate temperature 55°C

PCR data Exp. ID 13677
Forward primer (5'-3') AGGGTCAAGCATATCCATGTGGAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCTCTTGTGCATGGCTTGTTGAGC	Enzymes
Accessions and product sizes Petunia integrifolia TA3312: 500	Approximate temperature 55°C

PCR data Exp. ID 33185
Forward primer (5'-3') AGGGTCAAGCATATCCATGTGGAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCTCTTGTGCATGGCTTGTTGAGC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 500	Approximate temperature 55°C

PCR data Exp. ID 33186
Forward primer (5'-3') AGGGTCAAGCATATCCATGTGGAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCTCTTGTGCATGGCTTGTTGAGC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 550	Approximate temperature 55°C

PCR data Exp. ID 33187
Forward primer (5'-3') AGGGTCAAGCATATCCATGTGGAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCTCTTGTGCATGGCTTGTTGAGC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 600	Approximate temperature 55°C

PCR data Exp. ID 33188
Forward primer (5'-3') AGGGTCAAGCATATCCATGTGGAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCTCTTGTGCATGGCTTGTTGAGC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 550	Approximate temperature 55°C

PCR data Exp. ID 11676
Forward primer (5'-3') AGGGTCAAGCATATCCATGTGGAC	Digested band sizes (using amplicon difference) Solanum lycopersicum LA925: 300 Solanum pennellii LA716: 550	Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCTCTTGTGCATGGCTTGTTGAGC	Enzymes All possible enzymes for pennellii and and lycopersicum: amplicon difference
Accessions and product sizes Solanum lycopersicum LA925: 300 Solanum pennellii LA716: 550	Approximate temperature 55°C