SGN Marker TG162
SGN-M490
Synonyms |
Locus associations |
RFLP details |
Insert size
1400
|
Vector
pGEM4Z
|
Cutting Site
PST1
|
Drug Resistance
AMP
|
Image |
Forward sequence
CCCTGCATTAATTAATGGTGTTCAAGGACGAGAAGGAGTGAGACTAAGAGAAACATTTCTCTTCTAGTAGAACTTATATGTACACCGACA
AGACCAACACTACCACAGATAACAACTGTCACTAAACTAACAGGAAATAAGAATCCCACACCTGGACATCCAGTAATTCCTACAATATCA CCACGCTTCACACCAGAATGAAATTTAATGAAGTCTTCTTCATTCGACACAGAATCTCTGCGAATATATAAGGACATAATAATTCTCAAT GAAAAGAAAATTCTATTTCTCACAAACAACAAAATGATAAGAGTAATAGAACCACCTTGCACTTGTCATGACTTGAACTTTGGCACCTTC ACCATGTAAATCATAGAAAAGCAGCTTTGCAGAAGAGGCACGTTTGTTCATTATCCTTCCTATCGAAAAAAACAATCATTGATGCAAATT TATTTTTTTTAACAAAAAAC |
Reverse sequence
GTACACCAATCCAATAAAATACATAAACATTGTGTTTTCAGTTCCTTTCCCCTGCATTAATTAATGGTGTTCAAGTACGTGATGGAGTGA
GACTAAGAGTAACATTTCTCTTCTAATAGAACTTATTTGTACACCGCCAAGACCAACACTACCACAGATAACAACTGTCACTAAACTAAC AGGAAATAAGAATCCCACACCTGGACATCCAGTAATTCCTACAATATCACCACGCTTCACACCAGAATGAAATTTAATGAAGTCTTCTTC ATTCAACACAGAATCTCTGCAAATATATAAGGACATAATAATTCTCAATGAAAAGAAAATTCTATTTCTCACAAACAACAAAATGATAAG AGTAATAGAACCACCTTGCACTTGTCATGACTTGAACTTTGGCACCTTCACCATGTAAATCATAGAAAAGCAGCTTTGCAGAAGAGGCAC GTTTGTTCATTATCCTTCCTATCGAAAAAAACAATCATTGATGCAAATTTATTTTTTTTAACA |
RFLP sequence matches to unigenes |
Unigene | e value | Match length (bp) | Strand |
---|---|---|---|
SGN-U146368 | 3.3e-42 | 90 (19.1% of RFLP seq) | + |
SGN-U146368 | 1.4e-47 | 95 (20.2% of RFLP seq) | + |
SGN-U146368 | 1.5e-44 | 90 (17.5% of RFLP seq) | - |
SGN-U146368 | 1.5e-47 | 95 (18.5% of RFLP seq) | - |
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| ![]() Potato meta-QTL consensus map |
| ![]() Eggplant-COSII |
| ![]() Eggplant-LXM 2002 |
| ![]() Tomato-EXPEN 1992 |
| ![]() Potato-TXB 1992 |
Overgo hybridization and physical mapping |
TG162 was used as an overgo probe on plate 4 [well F1]
Plausible BAC Matches: None
Overgo Sequences
A sequence
GAACCACCTTGCACTTGTCATGAC
|
B sequence
AGGTGCCAAAGTTCAAGTCATGAC
|
AB sequence
GAACCACCTTGCACTTGTCATGACTTGAAC
|
Marker sequence
CCCTGCATTAATTAATGGTGTTCAAGGACGAGAAGGAGTGAGACTAAGAG
AAACATTTCTCTTCTAGTAGAACTTATATGTACACCGACAAGACCAACAC TACCACAGATAACAACTGTCACTAAACTAACAGGAAATAAGAATCCCACA CCTGGACATCCAGTAATTCCTACAATATCACCACGCTTCACACCAGAATG AAATTTAATGAAGTCTTCTTCATTCGACACAGAATCTCTGCGAATATATA AGGACATAATAATTCTCAATGAAAAGAAAATTCTATTTCTCACAAACAAC AAAATGATAAGAGTAATAGAACCACCTTGCACTTGTCATGACTTGAACTT TGGCACCTTCACCATGTAAATCATAGAAAAGCAGCTTTGCAGAAGAGGCA CGTTTGTTCATTATCCTTCCTATCGAAAAAAACAATCATTGATGCAAATT TATTTTTTTTAACAAAAAAC |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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