SGN Marker CT223
SGN-M542
Synonyms |
Locus associations |
RFLP details |
Insert size
600
|
Vector
pBLUESC
|
Cutting Site
EcoR1
|
Drug Resistance
AMP
|
Image
CT223 image not available
|
Forward sequence
CTTTTTTTTTTTTTTTTTTTTTTTTTAAAACAGCAACATTAGATGTAATATTATCCACAGTAAAATCACAGCAATTACATATTAATGAAG
ATGCCAAGAAATATTTTGAAAAGATAACATGGAATACAACTTAAACTTAATAGTACAATACAAGGATAACATCTATTGCGCCAAAGCACT TGTGTTGTAGACAAGGAGAGCACCTCCTGCAAGAATGCCAAGCAAGGTCACCGCCCATATGGCTAAGCCAGTGGTACCTCCAACATAGAC ATCACCACTTGGAGACCATTCATCCGTGTTGTAGATGGGACTGTATCCATCAACATTAGCTCCATATTTGTCAACATATTGGTACACACC CTTTCCCTTGGGCTTCCTGCCTGAGGCATCAACCCCATCTCTCAAGGGCATGCTTCCATTAATTCCATAGGGTTTGTCAGTCTTAAGCTT CTTAACACCACTAGCCACAACTTTGAAGGAAGAAGAAGATCTAGTAAGT |
Reverse sequence
CTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGAATTAAT
GGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCT AATGTTGATGGATACAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTACCACTGGCTTAGCCATA TGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTAT TGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTG TGGATAATATTACATCTAATGTTGCTGTTTTAAAAAAAAAAAAAAAAAAAA |
RFLP sequence matches to unigenes |
Unigene | e value | Match length (bp) | Strand |
---|---|---|---|
SGN-U149261 | 8.9e-06 | 61 (12.2% of RFLP seq) | + |
SGN-U149395 | 9.2e-09 | 30 (6.0% of RFLP seq) | + |
SGN-U149395 | 9.6e-12 | 39 (7.8% of RFLP seq) | + |
SGN-U149260 | 5.5e-41 | 176 (35.3% of RFLP seq) | + |
SGN-U162484 | 2.3e-43 | 176 (35.3% of RFLP seq) | + |
SGN-U143210 | 2.3e-46 | 97 (19.4% of RFLP seq) | + |
SGN-U143210 | 5.7e-81 | 151 (30.3% of RFLP seq) | + |
SGN-U160381 | 3.7e-82 | 169 (33.9% of RFLP seq) | + |
SGN-U167781 | 1.5e-84 | 389 (78.0% of RFLP seq) | + |
SGN-U143211 | 1e-122 | 221 (44.3% of RFLP seq) | + |
SGN-U143215 | 473 (94.8% of RFLP seq) | + | |
SGN-U143214 | 473 (94.8% of RFLP seq) | + | |
SGN-U149261 | 8.9e-06 | 61 (12.2% of RFLP seq) | - |
SGN-U149395 | 9.3e-09 | 30 (6.0% of RFLP seq) | - |
SGN-U149395 | 9.6e-12 | 39 (7.8% of RFLP seq) | - |
SGN-U149260 | 5.5e-41 | 176 (35.1% of RFLP seq) | - |
SGN-U162484 | 2.3e-43 | 176 (35.1% of RFLP seq) | - |
SGN-U143210 | 1.6e-53 | 105 (21.0% of RFLP seq) | - |
SGN-U143210 | 5.8e-81 | 151 (30.1% of RFLP seq) | - |
SGN-U167781 | 4e-88 | 415 (82.8% of RFLP seq) | - |
SGN-U160381 | 2.5e-89 | 177 (35.3% of RFLP seq) | - |
SGN-U143211 | 1e-122 | 221 (44.1% of RFLP seq) | - |
SGN-U143215 | 481 (96.0% of RFLP seq) | - | |
SGN-U143214 | 481 (96.0% of RFLP seq) | - |
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| ![]() Eggplant-COSII |
| ![]() Tomato-EXPEN 2000 |
| ![]() Eggplant-LXM 2002 |
| ![]() Tomato-EXPEN 1992 |
Overgo hybridization and physical mapping |
CT223 was used as an overgo probe on plate 7 [well E8]
Plausible BAC Matches: None
Overgo Sequences
A sequence
ACCACTTGGAGACCATTCATCCGT
|
B sequence
CAGTCCCATCTACAACACGGATGA
|
AB sequence
ACCACTTGGAGACCATTCATCCGTGTTGTA
|
Marker sequence
CTTTTTTTTTTTTTTTTTTTTTTTTTAAAACAGCAACATTAGATGTAATA
TTATCCACAGTAAAATCACAGCAATTACATATTAATGAAGATGCCAAGAA ATATTTTGAAAAGATAACATGGAATACAACTTAAACTTAATAGTACAATA CAAGGATAACATCTATTGCGCCAAAGCACTTGTGTTGTAGACAAGGAGAG CACCTCCTGCAAGAATGCCAAGCAAGGTCACCGCCCATATGGCTAAGCCA GTGGTACCTCCAACATAGACATCACCACTTGGAGACCATTCATCCGTGTT GTAGATGGGACTGTATCCATCAACATTAGCTCCATATTTGTCAACATATT GGTACACACCCTTTCCCTTGGGCTTCCTGCCTGAGGCATCAACCCCATCT CTCAAGGGCATGCTTCCATTAATTCCATAGGGTTTGTCAGTCTTAAGCTT CTTAACACCACTAGCCACAACTTTGAAGGAAGAAGAAGATCTAGTAAGT |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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