SGN Marker CT224
SGN-M547
Synonyms |
Locus associations |
RFLP details |
Insert size
1500
|
Vector
pBLUESC
|
Cutting Site
EcoR1
|
Drug Resistance
AMP
|
Image |
Forward sequence
TCCTTTAACTGCTTCCTGAAGGATTGCTTTTGTTGTAAAATCGAATGCAGTTGAAAGTTGTCCCGCGCCATCAATCCAATTGATGATTCT
TTGCCTGTGACTATCTTGGTTGTAATCCAAATTGCTGCCCTTGTAATTGCAAGTGTCCCAGTATTCTCCAACTGCAAATATTGGCTTAGC TCCCTCGATATATTCCTTTACATACTTCGAAGCATAACCTTTGGCAAAATCAAAACGAAAATCTTGGAAGCCAACAGAGGATCTTAGCCA CCGCATCCAGTCAATGAGATCTTTCCGGACAAAGGATTGTGTATGATCTATATTTGGAAATCCGTTAAAGTTGTCTCCAGTGCTTTTGTT ACCCCTTCCACCAGTGCAAGATGTAATAGCATGTTCATCCCAAGACATAGGAATTCCTTTTTTTTTTTTTTTAAACTAAAAGTTGGTTTC AAAGTAGATAAAAATAAAGTATTCTCAACAAGACGGGAGCAAACATAAGCAACTG |
Reverse sequence
TTTTTTTTTTTTTTTTTTTGGCGCCTACGGTAGGCAATCTGAACCTCCTCAGCCAAATTGGCCAAGTTAAGCATGTGAGAGAAAGCTTTA
GCAATAACAATTGAATCCCCTGGATCCAAACTTGTCAACACATTGCCAAGTTCCTCCAGCTTCTTCGGATCATGCTTGGCTTCATACTCG GCAGAAAGCTCATAACAATCTTGGACTGTTCCTTTGAGATCCTCTCCATGCAAATCTTGAAGAATATCAAGAAACCTATCCAAAAGCAAA GCATCATACTCAACAAGTTTATCATCTTCAGAAACTTTAGCAGGCACCAGTTGCCTCAACTGTGCATCAATTGAAGCAAGTTTCTCCAAA TTCTTAGCAGCCATTTCTCCATCTCTCTCAGCAGAGTCCAGCCAGCCATGGGTATCGATCTGAAGGCCGGAGGTAAGAGTAAGAAGACTA AGCGTACCGCCCCTAAGTCTGACGATGTTTACCTCAAGCTCCTCGTCAAGCTTTACCGATTCTTG |
RFLP sequence matches to unigenes |
Unigene | e value | Match length (bp) | Strand |
---|---|---|---|
SGN-U168994 | 1.6e-13 | 38 (7.5% of RFLP seq) | + |
SGN-U160967 | 1.8e-22 | 73 (14.5% of RFLP seq) | + |
SGN-U144144 | 2e-34 | 73 (14.5% of RFLP seq) | + |
SGN-U166531 | 1e-162 | 288 (57.0% of RFLP seq) | + |
SGN-U144780 | 3.8e-08 | 105 (20.4% of RFLP seq) | - |
SGN-U161250 | 3.8e-08 | 105 (20.4% of RFLP seq) | - |
SGN-U161249 | 3.8e-08 | 105 (20.4% of RFLP seq) | - |
SGN-U159296 | 7.1e-22 | 320 (62.1% of RFLP seq) | - |
SGN-U144144 | 9.3e-80 | 149 (28.9% of RFLP seq) | - |
SGN-U159575 | 9.3e-80 | 313 (60.8% of RFLP seq) | - |
SGN-U159664 | 1.6e-87 | 330 (64.1% of RFLP seq) | - |
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| ![]() Potato meta-QTL consensus map |
| ![]() Potato meta-QTL consensus map |
| ![]() Tomato-EXPEN 1992 |
| ![]() Tomato-EXPEN 1992 |
Overgo hybridization and physical mapping |
CT224 was used as an overgo probe on plate 15 [well E5]
Plausible BAC Matches: None
Overgo Sequences
A sequence
AAGCCAACAGAGGATCTTAGCCAC
|
B sequence
TCATTGACTGGATGCGGTGGCTAA
|
AB sequence
AAGCCAACAGAGGATCTTAGCCACCGCATC
|
Marker sequence
TCCTTTAACTGCTTCCTGAAGGATTGCTTTTGTTGTAAAATCGAATGCAG
TTGAAAGTTGTCCCGCGCCATCAATCCAATTGATGATTCTTTGCCTGTGA CTATCTTGGTTGTAATCCAAATTGCTGCCCTTGTAATTGCAAGTGTCCCA GTATTCTCCAACTGCAAATATTGGCTTAGCTCCCTCGATATATTCCTTTA CATACTTCGAAGCATAACCTTTGGCAAAATCAAAACGAAAATCTTGGAAG CCAACAGAGGATCTTAGCCACCGCATCCAGTCAATGAGATCTTTCCGGAC AAAGGATTGTGTATGATCTATATTTGGAAATCCGTTAAAGTTGTCTCCAG TGCTTTTGTTACCCCTTCCACCAGTGCAAGATGTAATAGCATGTTCATCC CAAGACATAGGAATTCCTTTTTTTTTTTTTTTAAACTAAAAGTTGGTTTC AAAGTAGATAAAAATAAAGTATTCTCAACAAGACGGGAGCAAACATAAGC AACTG |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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