SGN Marker CT228

SGN-M556

SynonymsNone
Locus associationsNone
RFLP details 
Insert size
900
Vector
pBLUESC
Cutting Site
EcoR1
Drug Resistance
AMP
Image
CT228 RFLP image
Forward sequence
CTTTTTTTTTTTTTTTTTTTTTTTAGATGAAAGAAAGTTTGTTCAGGTAGAACTTTTTGCATAGTAATGAGTTATTTACAATGATCACCA
ACTATAACAATATTTACAATAAGAAATGTTCATCTAGTACATTTCCACTCAATATTGATGTGCTTCTAAACTGTATTTACAAGGAAGCAA
TTACACTAGCAAACAACCATATCAATCTTCATACTGATAATTACGGATAATTTTGGTAGCATCTAGGCGTGCATATTTCGCATTACATGC
CAATCATGCACTAAAACCCCTGTGGAGGGAACTCCAGGTATAGGATGGAACACTGGGACAAGCTTGTGCCGATGCCTCCACCATCTGCTC
CATTTTAATTCCAGCGTTGCATATGTTAGCAACAGAGCGCATATGTTTCATTCCATACTGAGATACGATCCAC
Reverse sequence
TTTTTTTTTTTTTTTGTTGACTCTGTTATTTGTATCTGAGCAGTGAAAGACACAACCTGCGGACTGAAAGTTTGAAGCAGCAATATCACC
TGGTCAAAGAGAGAACTGCCAGTGGGAATCCTGCCTATGGTTCGCATGTCATGCAATATGGTGATGTACATCTCAGCAAGGATGCTGTAT
TCCTATATATGGGTACCGATCCTGCAAATGATAATTCTACTTTTATGGATGACAATTCCTTGCGAGTATCAAAGGCTGTAAACCAGCGTG
ATGCAGATCTTGTGCATTTCTGGTACAAGTTCCACAAGGCTCCTGAAGGCTCTGTTAGCAAAACTGAGGCTCAGAAACGCTTAAATGAAG
CAATATCACATAGAATGCACTTAGATAACAGCATAGCCCTTGTCGGTAAGCTTTTGTTTGGAATTAAAAAAGGTCCAGAGGTGCTGACTA
GTGTCCGCCCTGCTGGTCAGCCGCTTGTTGACAATTGGGACTGTCTTAAATCTTATGTAAGAACATTTG
RFLP sequence matches to unigenes 
Unigenee valueMatch length (bp)Strand
SGN-U1613761.4e-19124 (28.6% of RFLP seq)+
SGN-U1451011e-26140 (32.3% of RFLP seq)+
SGN-U145441381 (88.0% of RFLP seq)+
SGN-U1613762.6e-15105 (20.2% of RFLP seq)-
SGN-U1451021.7e-19182 (35.1% of RFLP seq)-
SGN-U1451023.2e-30222 (42.8% of RFLP seq)-
SGN-U1613768.6e-37255 (49.1% of RFLP seq)-
SGN-U1451011.5e-81482 (92.9% of RFLP seq)-
SGN-U145441479 (92.3% of RFLP seq)-
Mapped locations  
Map: Eggplant-RAD 2012   
Map version
174 (location: 132209)
Chromosome
8b
Position
3.22 cM
Confidence
uncalculated
Protocol
CAPS


Eggplant-RAD 2012

Map: Tomato - Kazusa and SolCAP markers mapped to genome   
Map version
105 (location: 49332)
Chromosome
8
Position
50.96 MB
Confidence
uncalculated
Protocol
unknown


Tomato - Kazusa and SolCAP markers mapped to genome

Map: Kazusa F2-2000 genetic map   
Map version
103 (location: 47269)
Chromosome
8
Position
31.07 cM
Confidence
uncalculated
Protocol
unknown


Kazusa F2-2000 genetic map

Map: Eggplant-COSII   
Map version
63 (location: 42331)
Chromosome
8
Position
39.90 cM
Confidence
I(LOD2)
Protocol
RFLP


Eggplant-COSII

Map: Tomato-EXPEN 2000   
Map version
52 (location: 39024)
Chromosome
8
Position
23.50 cM
Confidence
F(LOD3)
Protocol
RFLP


Tomato-EXPEN 2000

Map: Eggplant-LXM 2002   
Map version
29 (location: 9461)
Chromosome
8
Position
23.00 cM
Confidence
F(LOD3)
Protocol
RFLP


Eggplant-LXM 2002

Map: Tomato-EXPEN 1992   
Map version
28 (location: 9460)
Chromosome
8
Position
18.20 cM
Confidence
I(LOD2)
Protocol
RFLP


Tomato-EXPEN 1992
Overgo hybridization and physical mapping 
CT228 was used as an overgo probe on plate 12 [well H4]

Plausible BAC Matches:   P160B07,   P197A05

 Overgo Sequences

A sequence
GGAACTCCAGGTATAGGATGGAAC
B sequence
ACAAGCTTGTCCCAGTGTTCCATC
AB sequence
GGAACTCCAGGTATAGGATGGAACACTGGG
Marker sequence
CTTTTTTTTTTTTTTTTTTTTTTTAGATGAAAGAAAGTTTGTTCAGGTAG
AACTTTTTGCATAGTAATGAGTTATTTACAATGATCACCAACTATAACAA
TATTTACAATAAGAAATGTTCATCTAGTACATTTCCACTCAATATTGATG
TGCTTCTAAACTGTATTTACAAGGAAGCAATTACACTAGCAAACAACCAT
ATCAATCTTCATACTGATAATTACGGATAATTTTGGTAGCATCTAGGCGT
GCATATTTCGCATTACATGCCAATCATGCACTAAAACCCCTGTGGAGGGA
ACTCCAGGTATAGGATGGAACACTGGGACAAGCTTGTGCCGATGCCTCCA
CCATCTGCTCCATTTTAATTCCAGCGTTGCATATGTTAGCAACAGAGCGC
ATATGTTTCATTCCATACTGAGATACGATCCAC
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of CT228  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D556 marker 556
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