SGN Marker TG404

SGN-M570

SynonymsNone
Locus associationsNone
RFLP details 
Insert size
1500
Vector
pGEM4Z
Cutting Site
PST1
Drug Resistance
AMP
Image
Forward sequence
AGTAACAGTGTTCCGTGTTCTACAAGAGGTGCGTCGCATTATAACTGCAAAACAGGTGCTGAAGCTAATCCGTATTCACGTGGTTGCAGA
TGCTATTACTCGATGCCGGAGTTAAATTAATTAACGATCGAGTTAATCGATGTTAATTAACTATTAGTAAGTGTAATTGTTTTGAATAAT
TTCGGAGTGTGTATATTATGTACTTTAAGTAGGAGTATTTTCTTTTCAGTTGCGATTTCAAATAAAGTGATAGTGGTGCTTTGGCAGTGC
TTTATGGTTAATACAATGTTCATTTGGTGTTTGTTAATACATGTATTATTCTCTACTTTCTCTACTTGGGTCTGTTTGATTATTATATTC
ACGACAAATATTGTTGCAAACTAAAGGAAATATTGACGCAATTGGTAGATTTGTTATTAGGTGACAAGGAGGTCATATATTCAAGTTGAG
AAGACAATGTGCTCGTAAAGATAGACTTTGTGATTCGATAAATTCCCCACATAACGA
Reverse sequence
TGCATGCCTGCAGTTTATTCTTGTTCGCACCTGTAGAGTTTTGCTGGAATGTCTTCCCCTCCAACACTTACTCATCACTTGTCCTCCTCT
GTGTCCATTTGATCATATTGGCCGGTCTATGGATAAGTTCACCAGAATATCCATACGTAGAAGAAAAAACAACTGATAAATCTACATCTA
AGAAGAAGGCCAGATAAAGCACTATCTGGTTATGCATGTGAATGGCAAAATCCACCCCCCCAGGCGTCATTTGGGTATACTGAGAGGAGT
TTTTGTTTTTCTGTTTCTTTTCGTAGTGTTAATGCTTACAGCTTTGTTAGATGGTATACAAAACCAGAAAGCTGGTAACAACCACACACA
GATCATCCAATGGCATCAAGGATGAATATTTTCTGGGTTTTTCAACATTTGAGGATTTCATTAGCTCAAATCTGAATTAGACTTGAATAT
TTTAGAAGGCAACCTATTTTATTTATCTAAATCTGTGTGGCGTACTATTTATTGTCAAGATTTAAGGACATTTAGTCATTTT
RFLP sequence matches to unigenes 
Unigenee valueMatch length (bp)Strand
SGN-U1517919e-114282 (55.6% of RFLP seq)+
SGN-U1560853e-98215 (40.4% of RFLP seq)-
SGN-U1560855e-100230 (43.2% of RFLP seq)-
Mapped locations  
Map: Potato meta-QTL consensus map   
Map version
107 (location: 53300)
Chromosome
9
Position
74.05 cM
Confidence
uncalculated
Protocol
unknown

MQTL_1_Late_blight_9
Potato meta-QTL consensus map

Map: Tomato-EXPEN 2000   
Map version
52 (location: 40032)
Chromosome
9
Position
57.50 cM
Confidence
I(LOD2)
Protocol
RFLP


Tomato-EXPEN 2000

Map: Pepper-AC99   
Map version
34 (location: 9507)
Chromosome
3
Position
44.84 cM
Confidence
uncalculated
Protocol
RFLP


Pepper-AC99

Map: Tomato-EXPEN 1992   
Map version
28 (location: 9504)
Chromosome
9
Position
64.20 cM
Confidence
I(LOD2)
Protocol
RFLP


Tomato-EXPEN 1992

Map: Potato-TXB 1992   
Map version
27 (location: 9508)
Chromosome
9
Position
39.10 cM
Confidence
I(LOD2)
Protocol
RFLP


Potato-TXB 1992
Overgo hybridization and physical mapping 
TG404 was used as an overgo probe on plate 15 [well F3]

Plausible BAC Matches:   None

 Overgo Sequences

A sequence
TCCGTATTCACGTGGTTGCAGATG
B sequence
CGGCATCGAGTAATAGCATCTGCA
AB sequence
TCCGTATTCACGTGGTTGCAGATGCTATTA
Marker sequence
AGTAACAGTGTTCCGTGTTCTACAAGAGGTGCGTCGCATTATAACTGCAA
AACAGGTGCTGAAGCTAATCCGTATTCACGTGGTTGCAGATGCTATTACT
CGATGCCGGAGTTAAATTAATTAACGATCGAGTTAATCGATGTTAATTAA
CTATTAGTAAGTGTAATTGTTTTGAATAATTTCGGAGTGTGTATATTATG
TACTTTAAGTAGGAGTATTTTCTTTTCAGTTGCGATTTCAAATAAAGTGA
TAGTGGTGCTTTGGCAGTGCTTTATGGTTAATACAATGTTCATTTGGTGT
TTGTTAATACATGTATTATTCTCTACTTTCTCTACTTGGGTCTGTTTGAT
TATTATATTCACGACAAATATTGTTGCAAACTAAAGGAAATATTGACGCA
ATTGGTAGATTTGTTATTAGGTGACAAGGAGGTCATATATTCAAGTTGAG
AAGACAATGTGCTCGTAAAGATAGACTTTGTGATTCGATAAATTCCCCAC
ATAACGA
Marker Submitted By 
Name: Molly Jahn
Organization: Cornell University
Genomic location of TG404  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D570 marker 570
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