SGN Marker TG642
SGN-M6
Synonyms |
Locus associations |
RFLP details |
Insert size
1800
|
Vector
pGEM4Z
|
Cutting Site
PST1
|
Drug Resistance
AMP
|
Image
TG642 image not available
|
Forward sequence
TAGTAACTTCTTGGAGCGCCCCTTTCTGGCTATGTCATCCTCCTTTCAGCAGGGACGTTGCCTTTGAGCTCCTGATTCAACTCTCTAGTT
CGATTAAATAAGCAATTATACTAGTATTTAGTTGTAATCTGTATATGTAGTAGTCAGCACAGTTAAAAGTCTATTTACTAGATTTTTTTC CATAATTTTCAGAAGATTCTCTTCTAAAGATGTAGAGCGACCCACACCCCTTTTAGGCGGTGTAGTTGGTGTCCTTGCGGGAACAATCGT ATAGAAGATGACTGTTGTAATTATTAAATTAAACCATAATAAACGTGGAGAAAGATACAACTCTAGTTCTTTATTTTAGTTTTTTTTTCT TTGTTAGTTGGATGAGCTGATTGCCTGGCCTTTTGGGTCCACAAAAGATATGATAGCTACTTTTGAAGAACATCACTTCTTGAAAAGTTC AATGTCCAATTTCCTTGGTAGTAGTTCTTGGAGGTAGGGACAATGAAATTTTGAATTTGTAATTTGGAAATTAATAGATCAAACTCAAGA GTTTTCAACACTTTTAAGTTTGTCCACACTTTTGATCTACGACGTATATATAACAAATTATATCTATCA |
Reverse sequence
ACATTCCAATTTCCAACCACTAATATAACAAACATGTACACATACAAAGACAGAGCCTGTGCTGAGTCCCTGATTGTAGAAAAAACATGA
ACCAGTAACAAAAAATACCTGAGCGAGCTTAGCGGGTTATTAGGGAAGTTCTCATCAAGAGATGATTCTTCTGCAAGTATAAAAAAGTCA AAATCTTTTTTTTCAGCCTTGTCAGTGCATCAAGTCTAGATTTTCAAGTAAGAAAAAAACTATGCAAGAATCAATAACTGTTCGTCTCAA GTCCAGATTAGTCCAGTGAGTTATCTGATCAGATTTTCAAAACTAGTTTTACCAAACCGTCAACCTACTGCTACACCTCATTTTCTTTTT TACTGAATTCTGAACACAAACTCAACTAATTTCACGAGATTTCTATCACCTCCTGCAAATAACTCTGTCAGCTAGAACAAATAGGGAGAA ATCACCTACTATATTTTATCTCGGAATTTGAACCTGACACCTCCTGATTCTCAAAACACACCATACTTTACAAACATACATATCAAAATT ATGCAAGAAATGTGAAAAAATCACCCCACCCCACAAAAAAAAACAATATGGAAAGATTTTAATATATTGTACCAGTGGAATGGATGATAG GAGAATGAGGGGATGTAGTATCTCCACCCATAACTGTAAGCCT |
RFLP sequence matches to unigenes |
Unigene | e value | Match length (bp) | Strand |
---|---|---|---|
SGN-U168108 | 549 (90.1% of RFLP seq) | + |
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| ![]() Eggplant-COSII |
| ![]() Tomato-EXHIR 1997 |
| ![]() Eggplant-LXM 2002 |
| ![]() Tomato-EXPEN 1992 |
Overgo hybridization and physical mapping |
TG642 was used as an overgo probe on plate 2 [well H1]
Plausible BAC Matches: None
Overgo Sequences
A sequence
TTTCAGCAGGGACGTTGCCTTTGA
|
B sequence
GAGTTGAATCAGGAGCTCAAAGGC
|
AB sequence
TTTCAGCAGGGACGTTGCCTTTGAGCTCCT
|
Marker sequence
TAGTAACTTCTTGGAGCGCCCCTTTCTGGCTATGTCATCCTCCTTTCAGC
AGGGACGTTGCCTTTGAGCTCCTGATTCAACTCTCTAGTTCGATTAAATA AGCAATTATACTAGTATTTAGTTGTAATCTGTATATGTAGTAGTCAGCAC AGTTAAAAGTCTATTTACTAGATTTTTTTCCATAATTTTCAGAAGATTCT CTTCTAAAGATGTAGAGCGACCCACACCCCTTTTAGGCGGTGTAGTTGGT GTCCTTGCGGGAACAATCGTATAGAAGATGACTGTTGTAATTATTAAATT AAACCATAATAAACGTGGAGAAAGATACAACTCTAGTTCTTTATTTTAGT TTTTTTTTCTTTGTTAGTTGGATGAGCTGATTGCCTGGCCTTTTGGGTCC ACAAAAGATATGATAGCTACTTTTGAAGAACATCACTTCTTGAAAAGTTC AATGTCCAATTTCCTTGGTAGTAGTTCTTGGAGGTAGGGACAATGAAATT TTGAATTTGTAATTTGGAAATTAATAGATCAAACTCAAGAGTTTTCAACA CTTTTAAGTTTGTCCACACTTTTGATCTACGACGTATATATAACAAATTA TATCTATCA |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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