SGN Marker CT179
SGN-M609
Synonyms |
Locus associations |
RFLP details |
Insert size
900
|
Vector
pBLUESC
|
Cutting Site
EcoR1
|
Drug Resistance
AMP
|
Image |
Forward sequence
CTTTTTTTTTTTTTTTTTTAAAAAAAACGAAATTCAAATGGGCTTTTTTTTAGACCCACAAATCAAACTCAAACAAATTCAATTTAGAAC
TCATTGGATAAAGGAGCATGTTCTTGTGTCATGAACACATTTGTGTAAATAAAACCAGCCAAACTACCACCAACTAATGGACCAATCCAG TAGATCCAGAAACCCTCAAAGTTACCACTAACCATTGCAGGTCCAAATGAACGAGCTGGGTTCATTGATCCACCGGAGAATGGTCCGGCA GCCAAAATATTAGCTCCAACAATGAGACCAATTGCAATCGGTGCAATTGTGCCCAATGAACCCTTCTTCGGGTCAGCGGCGGTTGCCAAC ACAGTATAAACTAAACCAAATGTGATTATTATTTCCATCACGAGTCCTTCTAGTATGCTCACACCAACTCCCACTCCATGGGTTGGA |
Reverse sequence
TTTTTTTTTTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCG
AATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGCAAGTTGACAACAAATGCTGCACTTGATCCGG CTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACC CTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTG TAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCG TGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGA |
RFLP sequence matches to unigenes |
Unigene | e value | Match length (bp) | Strand |
---|---|---|---|
SGN-U143803 | 3.1e-05 | 32 (7.2% of RFLP seq) | + |
SGN-U160777 | 3.1e-05 | 32 (7.2% of RFLP seq) | + |
SGN-U147365 | 8.6e-12 | 95 (21.3% of RFLP seq) | + |
SGN-U144813 | 1.4e-16 | 99 (22.1% of RFLP seq) | + |
SGN-U144812 | 1.3e-44 | 314 (70.2% of RFLP seq) | + |
SGN-U143842 | 420 (94.0% of RFLP seq) | + | |
SGN-U160803 | 420 (94.0% of RFLP seq) | + | |
SGN-U161259 | 2.4e-09 | 143 (28.1% of RFLP seq) | - |
SGN-U173091 | 4.8e-29 | 196 (38.6% of RFLP seq) | - |
SGN-U144813 | 5.4e-38 | 231 (45.5% of RFLP seq) | - |
SGN-U144812 | 5.4e-38 | 231 (45.5% of RFLP seq) | - |
SGN-U160803 | 1.7e-56 | 110 (21.7% of RFLP seq) | - |
SGN-U160802 | 3.3e-73 | 138 (27.2% of RFLP seq) | - |
SGN-U160803 | 2.4e-83 | 155 (30.5% of RFLP seq) | - |
SGN-U143842 | 498 (98.0% of RFLP seq) | - |
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| ![]() Pepper-AC99 |
| ![]() Tomato-EXPEN 1992 |
Overgo hybridization and physical mapping |
CT179 was used as an overgo probe on plate 2 [well A10]
Plausible BAC Matches: None
Overgo Sequences
A sequence
CCATTGCAGGTCCAAATGAACGAG
|
B sequence
GGATCAATGAACCCAGCTCGTTCA
|
AB sequence
CCATTGCAGGTCCAAATGAACGAGCTGGGT
|
Marker sequence
CTTTTTTTTTTTTTTTTTTAAAAAAAACGAAATTCAAATGGGCTTTTTTT
TAGACCCACAAATCAAACTCAAACAAATTCAATTTAGAACTCATTGGATA AAGGAGCATGTTCTTGTGTCATGAACACATTTGTGTAAATAAAACCAGCC AAACTACCACCAACTAATGGACCAATCCAGTAGATCCAGAAACCCTCAAA GTTACCACTAACCATTGCAGGTCCAAATGAACGAGCTGGGTTCATTGATC CACCGGAGAATGGTCCGGCAGCCAAAATATTAGCTCCAACAATGAGACCA ATTGCAATCGGTGCAATTGTGCCCAATGAACCCTTCTTCGGGTCAGCGGC GGTTGCCAACACAGTATAAACTAAACCAAATGTGATTATTATTTCCATCA CGAGTCCTTCTAGTATGCTCACACCAACTCCCACTCCATGGGTTGGA |
Marker Submitted By |
Name: Molly Jahn
Organization: Cornell University
Organization: Cornell University
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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