SGN Marker CT179

SGN-M609

SynonymsNone
Locus associationsNone
RFLP details 
Insert size
900
Vector
pBLUESC
Cutting Site
EcoR1
Drug Resistance
AMP
Image
CT179 RFLP image
Forward sequence
CTTTTTTTTTTTTTTTTTTAAAAAAAACGAAATTCAAATGGGCTTTTTTTTAGACCCACAAATCAAACTCAAACAAATTCAATTTAGAAC
TCATTGGATAAAGGAGCATGTTCTTGTGTCATGAACACATTTGTGTAAATAAAACCAGCCAAACTACCACCAACTAATGGACCAATCCAG
TAGATCCAGAAACCCTCAAAGTTACCACTAACCATTGCAGGTCCAAATGAACGAGCTGGGTTCATTGATCCACCGGAGAATGGTCCGGCA
GCCAAAATATTAGCTCCAACAATGAGACCAATTGCAATCGGTGCAATTGTGCCCAATGAACCCTTCTTCGGGTCAGCGGCGGTTGCCAAC
ACAGTATAAACTAAACCAAATGTGATTATTATTTCCATCACGAGTCCTTCTAGTATGCTCACACCAACTCCCACTCCATGGGTTGGA
Reverse sequence
TTTTTTTTTTAGTAAAAATGGCTGGCGGCGTAGCTATTGGAAGTTTTAGTGATTCATTCAGCGTTGTCTCTCTTAAGTCCTATCTTGCCG
AATTCATCTCCACACTCATCTTTGTCTTCGCCGGAGTTGGTTCCGCCATTGCTTACGGCAAGTTGACAACAAATGCTGCACTTGATCCGG
CTGGGCTTGTAGCTATTGCAGTTTGCCATGGATTTGCTCTATTCGTAGCCGTTTCGATTTCCGCTAACATCTCCGGTGGTCATGTTAACC
CTGCGGTCACCTGTGGATTAACCTTCGGCGGACATATTACCTTTATCACTGGCTCCTTCTACATGCTTGCTCAACTTACCGGCGCCGCTG
TAGCTTGCTTCCTCCTCAAATTCGTCACCGGAGGATGTGCTATTCCAACCCATGGAGTGGGAGCTGGTGTGAGCATACTAGAAGGACTCG
TGATGGAAATAATAATCACATTTGGTTTAGTTTATACTGTGTTCGCAACCGCCGCTGA
RFLP sequence matches to unigenes 
Unigenee valueMatch length (bp)Strand
SGN-U1438033.1e-0532 (7.2% of RFLP seq)+
SGN-U1607773.1e-0532 (7.2% of RFLP seq)+
SGN-U1473658.6e-1295 (21.3% of RFLP seq)+
SGN-U1448131.4e-1699 (22.1% of RFLP seq)+
SGN-U1448121.3e-44314 (70.2% of RFLP seq)+
SGN-U143842420 (94.0% of RFLP seq)+
SGN-U160803420 (94.0% of RFLP seq)+
SGN-U1612592.4e-09143 (28.1% of RFLP seq)-
SGN-U1730914.8e-29196 (38.6% of RFLP seq)-
SGN-U1448135.4e-38231 (45.5% of RFLP seq)-
SGN-U1448125.4e-38231 (45.5% of RFLP seq)-
SGN-U1608031.7e-56110 (21.7% of RFLP seq)-
SGN-U1608023.3e-73138 (27.2% of RFLP seq)-
SGN-U1608032.4e-83155 (30.5% of RFLP seq)-
SGN-U143842498 (98.0% of RFLP seq)-
Mapped locations  
Map: Pepper-AC99   
Map version
34 (location: 9616)
Chromosome
3
Position
138.62 cM
Confidence
uncalculated
Protocol
RFLP


Pepper-AC99

Map: Tomato-EXPEN 1992   
Map version
28 (location: 9615)
Chromosome
3
Position
113.40 cM
Confidence
I(LOD2)
Protocol
RFLP


Tomato-EXPEN 1992
Overgo hybridization and physical mapping 
CT179 was used as an overgo probe on plate 2 [well A10]

Plausible BAC Matches:   None

 Non-Plausible BAC matches

P121P11,   P080O10,   P099K05,   P202O01,   P105A13

 Overgo Sequences

A sequence
CCATTGCAGGTCCAAATGAACGAG
B sequence
GGATCAATGAACCCAGCTCGTTCA
AB sequence
CCATTGCAGGTCCAAATGAACGAGCTGGGT
Marker sequence
CTTTTTTTTTTTTTTTTTTAAAAAAAACGAAATTCAAATGGGCTTTTTTT
TAGACCCACAAATCAAACTCAAACAAATTCAATTTAGAACTCATTGGATA
AAGGAGCATGTTCTTGTGTCATGAACACATTTGTGTAAATAAAACCAGCC
AAACTACCACCAACTAATGGACCAATCCAGTAGATCCAGAAACCCTCAAA
GTTACCACTAACCATTGCAGGTCCAAATGAACGAGCTGGGTTCATTGATC
CACCGGAGAATGGTCCGGCAGCCAAAATATTAGCTCCAACAATGAGACCA
ATTGCAATCGGTGCAATTGTGCCCAATGAACCCTTCTTCGGGTCAGCGGC
GGTTGCCAACACAGTATAAACTAAACCAAATGTGATTATTATTTCCATCA
CGAGTCCTTCTAGTATGCTCACACCAACTCCCACTCCATGGGTTGGA
Marker Submitted By 
Name: Molly Jahn
Organization: Cornell University
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of CT179  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D609 marker 609
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