SGN Marker C2_At1g06110

SGN-M6521
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle301222 (SGN)
124042 (CGN)		---
Lycopersicon CombinedMultipleSGN-U231937---
Solanum tuberosumSingleSGN-U247173---
ArabidopsisSingleAt1g06110 on TAIR---
Mapped locations  
Map: Pepper-COSII   
Map version
58 (location: 41289)
Chromosome
6
Position
55.90 cM
Confidence
I(LOD2)
Protocol
CAPS


Pepper-COSII

PCR data   Exp. ID 43265
Forward primer (5'-3')
TTGACTTATCTTCTCCAATTGACCC
Accessions and product sizes
Approximate temperature
58°C
Reverse primer (5'-3')
AGAGAACCCTAGTAGGTAGAGGCAG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
Unknown
   Enzymes
  

Map: Tomato-EXPEN 2000   
Map version
52 (location: 38066)
Chromosome
6
Position
28.00 cM
Confidence
CF(LOD3)
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39369
Forward primer (5'-3')
TTGACTTATCTTCTCCAATTGACCC
Accessions and product sizes
Solanum pennellii TA56
225
Solanum lycopersicum TA209
225
Approximate temperature
53°C
Reverse primer (5'-3')
AGAGAACCCTAGTAGGTAGAGGCAG
Digested band sizes (using amplicon difference)
Solanum pennellii TA56
100
Solanum lycopersicum TA209
225
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 24918)
Chromosome
1
Position
1.85 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At1g06110  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6521 marker 6521
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