SGN Marker C2_At1g09760

SGN-M6564
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle309772 (SGN)
129888 (CGN)
---
Lycopersicon CombinedSingleSGN-U215752---
Solanum tuberosumMultipleSGN-U246950---
ArabidopsisSingleAt1g09760 on TAIR---
Mapped locations  
Map: Tomato-EXPEN 2000   
Map version
52 (location: 38080)
Chromosome
3
Position
133.50 cM
Confidence
I(LOD2)
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39376
Forward primer (5'-3')
TCAAGCATCTAAGCCAGTTGCTCC
Accessions and product sizes
Solanum pennellii TA56
900
Solanum lycopersicum TA209
900
Approximate temperature
55°C
Reverse primer (5'-3')
TAGCCACCTCCTCAAGAGTTTGGG
Digested band sizes (using amplicon difference)
Solanum pennellii TA56
500
Solanum lycopersicum TA209
700
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 24962)
Chromosome
1
Position
3.16 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Other PCR data 
PCR data   Exp. ID 9974
Forward primer (5'-3')
TCAAGCATCTAAGCCAGTTGCTCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TAGCCACCTCCTCAAGAGTTTGGG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 900
Approximate temperature
55°C
  
PCR data   Exp. ID 9975
Forward primer (5'-3')
TCAAGCATCTAAGCCAGTTGCTCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TAGCCACCTCCTCAAGAGTTTGGG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 900
Approximate temperature
55°C
  
PCR data   Exp. ID 9976
Forward primer (5'-3')
TCAAGCATCTAAGCCAGTTGCTCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TAGCCACCTCCTCAAGAGTTTGGG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 900
Approximate temperature
55°C
  
PCR data   Exp. ID 9977
Forward primer (5'-3')
TCAAGCATCTAAGCCAGTTGCTCC
Digested band sizes (using HincII)
Solanum lycopersicum LA925: 700
Solanum pennellii LA716: 500
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TAGCCACCTCCTCAAGAGTTTGGG
Enzymes
All possible enzymes for pennellii and and lycopersicum: HincII,BglI,HindIII
  
Accessions and product sizes
Solanum lycopersicum LA925: 900
Solanum pennellii LA716: 900
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Amplicon sequence alignment, FASTA
At1g09760F.cds.txt, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, plain text

Genomic location of C2_At1g09760  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6564 marker 6564
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