SGN Marker C2_At1g09830

SGN-M6566
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle307296 (SGN)
127154 (CGN)		---
Lycopersicon CombinedSingleSGN-U222585---
Solanum tuberosumSingleSGN-U258413---
ArabidopsisSingleAt1g09830 on TAIR---
Mapped locations  
Map: Tomato-EXPEN 2000   
Map version
52 (location: 38082)
Chromosome
1
Position
128.50 cM
Confidence
I
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39377
Forward primer (5'-3')
TCGTTGTAGAGGAATATTTGGAAGGAG
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
ACCAAATCAGACTCTAACCGGACCATC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 24964)
Chromosome
1
Position
3.19 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Other PCR data 
PCR data   Exp. ID 9978
Forward primer (5'-3')
TCGTTGTAGAGGAATATTTGGAAGGAG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ACCAAATCAGACTCTAACCGGACCATC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 1600
 Approximate temperature
55°C
  
PCR data   Exp. ID 9979
Forward primer (5'-3')
TCGTTGTAGAGGAATATTTGGAAGGAG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ACCAAATCAGACTCTAACCGGACCATC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 1700
 Approximate temperature
55°C
  
PCR data   Exp. ID 9980
Forward primer (5'-3')
TCGTTGTAGAGGAATATTTGGAAGGAG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ACCAAATCAGACTCTAACCGGACCATC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 1650
 Approximate temperature
55°C
  
PCR data   Exp. ID 32193
Forward primer (5'-3')
TCGTTGTAGAGGAATATTTGGAAGGAG
Digested band sizes (using amplicon difference)
Solanum pennellii LA716: 1600
Solanum lycopersicum LA925: 1700
 Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ACCAAATCAGACTCTAACCGGACCATC
Enzymes
All possible enzymes for pennellii and and lycopersicum: amplicon difference
   
Accessions and product sizes
Solanum pennellii LA716: 1600
Solanum lycopersicum LA925: 1700
 Approximate temperature
55°C
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Forward amplicon sequence for S. hirtum 120062 plant #28, AB1 chromatogram - [View]
Forward amplicon sequence for S. hirtum 120062 plant #28, plain text
Forward amplicon sequence for S. quitoense plant #3, AB1 chromatogram - [View]
Forward amplicon sequence for S. quitoense plant #3, plain text
Forward amplicon sequence for S. betaceum 6002061 plant #4, AB1 chromatogram - [View]
Forward amplicon sequence for S. betaceum 6002061 plant #4, plain text
Forward amplicon sequence for S. uniloba 6002078 plant #6, AB1 chromatogram - [View]
Forward amplicon sequence for S. uniloba 6002078 plant #6, plain text
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Forward amplicon sequence for S. hirtum 120062 plant #28, AB1 chromatogram - [View]
Forward amplicon sequence for S. hirtum 120062 plant #28, plain text
Forward amplicon sequence for S. quitoense plant #3, AB1 chromatogram - [View]
Forward amplicon sequence for S. quitoense plant #3, plain text
Forward amplicon sequence for S. betaceum 6002061 plant #4, AB1 chromatogram - [View]
Forward amplicon sequence for S. betaceum 6002061 plant #4, plain text
Forward amplicon sequence for S. uniloba 6002078 plant #6, AB1 chromatogram - [View]
Forward amplicon sequence for S. uniloba 6002078 plant #6, plain text
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At1g09830  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6566 marker 6566
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