SGN Marker C2_At1g11750

SGN-M6583
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
Capsicum annuumSingleSGN-U197262---
Lycopersicon CombinedSingleSGN-U217847---
Solanum tuberosumSingleSGN-U247131---
ArabidopsisSingleAt1g11750 on TAIR---
Mapped locations  
Map: Tomato-EXPEN 2000   
Map version
52 (location: 38092)
Chromosome
10
Position
33.70 cM
Confidence
I
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39384
Forward primer (5'-3')
TCGCCGGAGCATCAAAATGG
Accessions and product sizes
Solanum lycopersicum TA209
1650
Solanum pennellii TA56
1650
Approximate temperature
55°C
Reverse primer (5'-3')
TGCTTGAAAATCCAATATCTGATGAATC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 24982)
Chromosome
1
Position
3.97 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Other PCR data 
PCR data   Exp. ID 9999
Forward primer (5'-3')
TCGCCGGAGCATCAAAATGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGCTTGAAAATCCAATATCTGATGAATC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 350
Approximate temperature
55°C
  
PCR data   Exp. ID 10000
Forward primer (5'-3')
TCGCCGGAGCATCAAAATGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGCTTGAAAATCCAATATCTGATGAATC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 350
Approximate temperature
55°C
  
PCR data   Exp. ID 10001
Forward primer (5'-3')
TCGCCGGAGCATCAAAATGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGCTTGAAAATCCAATATCTGATGAATC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 350
Approximate temperature
55°C
  
PCR data   Exp. ID 32198
Forward primer (5'-3')
TCGCCGGAGCATCAAAATGG
Digested band sizes (using BstBI)
Solanum pennellii LA716: 350
Solanum lycopersicum LA925: 300
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGCTTGAAAATCCAATATCTGATGAATC
Enzymes
All possible enzymes for pennellii and and lycopersicum: BstBI,TaqI
  
Accessions and product sizes
Solanum pennellii LA716: 350
Solanum lycopersicum LA925: 350
Approximate temperature
55°C
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Amplicon sequence alignment, FASTA
At1g11750F.cds.txt, plain text
Forward amplicon sequence for S. pimpinellifolium LA1589, AB1 chromatogram - [View]
Forward amplicon sequence for S. pimpinellifolium LA1589, PDF chromatogram
Forward amplicon sequence for S. pimpinellifolium LA1589, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, PDF chromatogram
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, PDF chromatogram
Forward amplicon sequence for S. pennellii TA56, plain text

Genomic location of C2_At1g11750  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6583 marker 6583
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