Sol Genomics Network

SGN Marker C2_At1g12410

SGN-M6594
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	301797 (SGN) 123256 (CGN)	-	-	-
Capsicum annuum	Single	SGN-U200944	-	-	-
Lycopersicon Combined	Single	SGN-U214597	-	-	-
Solanum tuberosum	Single	SGN-U244768	-	-	-
Arabidopsis	Single	At1g12410 on TAIR	-	-	-

Mapped locations

Map: Arabidopsis COSII
Map version 44 (location: 24993)
Chromosome 1
Position 4.22 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

PCR data Exp. ID 41026

Forward primer (5'-3')

ATGTTTATCAATGGGCCTGGTGG

Accessions and product sizes

Solanum lycopersicum TA209

250

Solanum pennellii TA56

250

Approximate temperature

55°C

Reverse primer (5'-3')

AAGATTGTAGGCAAAGCCCACAC

Digested band sizes (using amplicon difference)

Solanum lycopersicum TA209

130

Solanum pennellii TA56

250

Mg⁺² concentration

1.5mM

Enzymes

Other PCR data

PCR data Exp. ID 10008
Forward primer (5'-3') ATGTTTATCAATGGGCCTGGTGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AAGATTGTAGGCAAAGCCCACAC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 250	Approximate temperature 55°C

PCR data Exp. ID 10009
Forward primer (5'-3') ATGTTTATCAATGGGCCTGGTGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AAGATTGTAGGCAAAGCCCACAC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 250	Approximate temperature 55°C

PCR data Exp. ID 10010
Forward primer (5'-3') ATGTTTATCAATGGGCCTGGTGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AAGATTGTAGGCAAAGCCCACAC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 250	Approximate temperature 55°C

PCR data Exp. ID 12389
Forward primer (5'-3') ATGTTTATCAATGGGCCTGGTGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AAGATTGTAGGCAAAGCCCACAC	Enzymes
Accessions and product sizes Solanum tuberosum TA3427: 300	Approximate temperature 55°C

PCR data Exp. ID 12390
Forward primer (5'-3') ATGTTTATCAATGGGCCTGGTGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AAGATTGTAGGCAAAGCCCACAC	Enzymes
Accessions and product sizes Solanum melongena TA2986: 250	Approximate temperature 55°C

PCR data Exp. ID 12391
Forward primer (5'-3') ATGTTTATCAATGGGCCTGGTGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AAGATTGTAGGCAAAGCCCACAC	Enzymes
Accessions and product sizes Capsicum annuum TA3428: 300	Approximate temperature 55°C

PCR data Exp. ID 12392
Forward primer (5'-3') ATGTTTATCAATGGGCCTGGTGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AAGATTGTAGGCAAAGCCCACAC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 300	Approximate temperature 55°C

PCR data Exp. ID 12393
Forward primer (5'-3') ATGTTTATCAATGGGCCTGGTGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AAGATTGTAGGCAAAGCCCACAC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 300	Approximate temperature 55°C

PCR data Exp. ID 12394
Forward primer (5'-3') ATGTTTATCAATGGGCCTGGTGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AAGATTGTAGGCAAAGCCCACAC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 350	Approximate temperature 55°C

PCR data Exp. ID 12395
Forward primer (5'-3') ATGTTTATCAATGGGCCTGGTGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AAGATTGTAGGCAAAGCCCACAC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 350	Approximate temperature 55°C

PCR data Exp. ID 12396
Forward primer (5'-3') ATGTTTATCAATGGGCCTGGTGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AAGATTGTAGGCAAAGCCCACAC	Enzymes
Accessions and product sizes Nicotiana plumbaginifolia TA3354: 300+550	Approximate temperature 55°C

PCR data Exp. ID 12397
Forward primer (5'-3') ATGTTTATCAATGGGCCTGGTGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AAGATTGTAGGCAAAGCCCACAC	Enzymes
Accessions and product sizes Physalis TA1367: 500	Approximate temperature 55°C

PCR data Exp. ID 12398
Forward primer (5'-3') ATGTTTATCAATGGGCCTGGTGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AAGATTGTAGGCAAAGCCCACAC	Enzymes
Accessions and product sizes Petunia axillaris TA3309: 280	Approximate temperature 55°C

PCR data Exp. ID 12399
Forward primer (5'-3') ATGTTTATCAATGGGCCTGGTGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AAGATTGTAGGCAAAGCCCACAC	Enzymes
Accessions and product sizes Petunia x hybrida TA3311: 280	Approximate temperature 55°C

PCR data Exp. ID 12400
Forward primer (5'-3') ATGTTTATCAATGGGCCTGGTGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AAGATTGTAGGCAAAGCCCACAC	Enzymes
Accessions and product sizes Petunia integrifolia TA3312: 280	Approximate temperature 55°C

PCR data Exp. ID 32683
Forward primer (5'-3') ATGTTTATCAATGGGCCTGGTGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AAGATTGTAGGCAAAGCCCACAC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 300	Approximate temperature 55°C

PCR data Exp. ID 32684
Forward primer (5'-3') ATGTTTATCAATGGGCCTGGTGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AAGATTGTAGGCAAAGCCCACAC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 300	Approximate temperature 55°C

PCR data Exp. ID 32685
Forward primer (5'-3') ATGTTTATCAATGGGCCTGGTGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AAGATTGTAGGCAAAGCCCACAC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 350	Approximate temperature 55°C

PCR data Exp. ID 32686
Forward primer (5'-3') ATGTTTATCAATGGGCCTGGTGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AAGATTGTAGGCAAAGCCCACAC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 350	Approximate temperature 55°C