SGN Marker C2_At1g12840

SGN-M6597
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
Capsicum annuumSingleSGN-U198274---
Lycopersicon CombinedMultipleSGN-U214792---
Solanum tuberosumSingleSGN-U245418---
ArabidopsisSingleAt1g12840 on TAIR---
Mapped locations  
Map: Tomato-EXPEN 2000   
Map version
52 (location: 38095)
Chromosome
3
Position
72.10 cM
Confidence
I
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39387
Forward primer (5'-3')
ATGGCTTCCAGGTATTGGGTGG
Accessions and product sizes
Solanum lycopersicum TA209
1000
Solanum pennellii TA56
1000
Approximate temperature
55°C
Reverse primer (5'-3')
TGAGAACGCCGGAAACTCTCTCC
Digested band sizes (using amplicon difference)
Solanum pennellii TA56
800
Solanum lycopersicum TA209
1000
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 24996)
Chromosome
1
Position
4.38 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Universal primers for Asterid species 
No additional PCR data found.
Genomic location of C2_At1g12840  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6597 marker 6597
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