Sol Genomics Network

SGN Marker C2_At1g13690

SGN-M6599
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Capsicum annuum	Single	SGN-U198897	-	-	-
Lycopersicon Combined	Single	SGN-U226992	-	-	-
Solanum tuberosum	Single	SGN-U250263	-	-	-
Arabidopsis	Single	At1g13690 on TAIR	-	-	-

Mapped locations

Map: Arabidopsis COSII
Map version 44 (location: 24999)
Chromosome 1
Position 4.69 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

PCR data Exp. ID 41027

Forward primer (5'-3')

TGGTGAACAGGGTTGGGCTGCTC

Accessions and product sizes

Solanum pennellii TA56

150

Solanum lycopersicum TA209

150

Approximate temperature

55°C

Reverse primer (5'-3')

TGCTGTTGCCTCTCAAACCATGTGTC

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

1.5mM

Enzymes

Other PCR data

PCR data Exp. ID 10015
Forward primer (5'-3') TGGTGAACAGGGTTGGGCTGCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCTGTTGCCTCTCAAACCATGTGTC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 2300	Approximate temperature 55°C

PCR data Exp. ID 10016
Forward primer (5'-3') TGGTGAACAGGGTTGGGCTGCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCTGTTGCCTCTCAAACCATGTGTC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 2300	Approximate temperature 55°C

PCR data Exp. ID 10017
Forward primer (5'-3') TGGTGAACAGGGTTGGGCTGCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCTGTTGCCTCTCAAACCATGTGTC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 2300	Approximate temperature 55°C

PCR data Exp. ID 12158
Forward primer (5'-3') TCTGTACGTAGGAGGATTAGCAGAGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCAGCTTCAGCCGTTGCCATAG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 250	Approximate temperature 55°C

PCR data Exp. ID 12159
Forward primer (5'-3') TCTGTACGTAGGAGGATTAGCAGAGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCAGCTTCAGCCGTTGCCATAG	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 250	Approximate temperature 55°C

PCR data Exp. ID 12160
Forward primer (5'-3') TCTGTACGTAGGAGGATTAGCAGAGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCAGCTTCAGCCGTTGCCATAG	Enzymes
Accessions and product sizes Petunia axillaris subsp. parodii TA3310: 250	Approximate temperature 55°C

PCR data Exp. ID 12161
Forward primer (5'-3') TCTGTACGTAGGAGGATTAGCAGAGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCAGCTTCAGCCGTTGCCATAG	Enzymes
Accessions and product sizes Petunia x hybrida TA3311: 250	Approximate temperature 55°C

PCR data Exp. ID 12415
Forward primer (5'-3') TGGTGAACAGGGTTGGGCTGCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCTGTTGCCTCTCAAACCATGTGTC	Enzymes
Accessions and product sizes Capsicum annuum TA3428: 300	Approximate temperature 55°C

PCR data Exp. ID 12416
Forward primer (5'-3') TGGTGAACAGGGTTGGGCTGCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCTGTTGCCTCTCAAACCATGTGTC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: Multiple	Approximate temperature 55°C

PCR data Exp. ID 12417
Forward primer (5'-3') TGGTGAACAGGGTTGGGCTGCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCTGTTGCCTCTCAAACCATGTGTC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: Multiple	Approximate temperature 55°C

PCR data Exp. ID 12418
Forward primer (5'-3') TGGTGAACAGGGTTGGGCTGCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCTGTTGCCTCTCAAACCATGTGTC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: Multiple	Approximate temperature 55°C

PCR data Exp. ID 12419
Forward primer (5'-3') TGGTGAACAGGGTTGGGCTGCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCTGTTGCCTCTCAAACCATGTGTC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: Multiple	Approximate temperature 55°C

PCR data Exp. ID 12420
Forward primer (5'-3') TGGTGAACAGGGTTGGGCTGCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCTGTTGCCTCTCAAACCATGTGTC	Enzymes
Accessions and product sizes Physalis TA1367: Multiple	Approximate temperature 55°C

PCR data Exp. ID 12421
Forward primer (5'-3') TGGTGAACAGGGTTGGGCTGCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCTGTTGCCTCTCAAACCATGTGTC	Enzymes
Accessions and product sizes Petunia axillaris subsp. parodii TA3310: Multiple	Approximate temperature 55°C

PCR data Exp. ID 12422
Forward primer (5'-3') TGGTGAACAGGGTTGGGCTGCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCTGTTGCCTCTCAAACCATGTGTC	Enzymes
Accessions and product sizes Petunia x hybrida TA3311: Multiple	Approximate temperature 55°C

PCR data Exp. ID 12423
Forward primer (5'-3') TGGTGAACAGGGTTGGGCTGCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCTGTTGCCTCTCAAACCATGTGTC	Enzymes
Accessions and product sizes Coffea canephora BP409: Multiple	Approximate temperature 55°C

PCR data Exp. ID 32199
Forward primer (5'-3') TGGTGAACAGGGTTGGGCTGCTC		Mg⁺² concentration 40mM
Reverse primer (5'-3') TGCTGTTGCCTCTCAAACCATGTGTC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 2300	Approximate temperature 55°C

PCR data Exp. ID 32200
Forward primer (5'-3') TGGTGAACAGGGTTGGGCTGCTC		Mg⁺² concentration 40mM
Reverse primer (5'-3') TGCTGTTGCCTCTCAAACCATGTGTC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 2300	Approximate temperature 55°C

PCR data Exp. ID 32201
Forward primer (5'-3') TGGTGAACAGGGTTGGGCTGCTC		Mg⁺² concentration 40mM
Reverse primer (5'-3') TGCTGTTGCCTCTCAAACCATGTGTC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 2300	Approximate temperature 55°C

PCR data Exp. ID 32691
Forward primer (5'-3') TGGTGAACAGGGTTGGGCTGCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCTGTTGCCTCTCAAACCATGTGTC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: Multiple	Approximate temperature 55°C

PCR data Exp. ID 32692
Forward primer (5'-3') TGGTGAACAGGGTTGGGCTGCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCTGTTGCCTCTCAAACCATGTGTC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: Multiple	Approximate temperature 55°C

PCR data Exp. ID 32693
Forward primer (5'-3') TGGTGAACAGGGTTGGGCTGCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCTGTTGCCTCTCAAACCATGTGTC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: Multiple	Approximate temperature 55°C

PCR data Exp. ID 32694
Forward primer (5'-3') TGGTGAACAGGGTTGGGCTGCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCTGTTGCCTCTCAAACCATGTGTC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: Multiple	Approximate temperature 55°C

PCR data Exp. ID 33305
Forward primer (5'-3') TCTGTACGTAGGAGGATTAGCAGAGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCAGCTTCAGCCGTTGCCATAG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 250	Approximate temperature 55°C

PCR data Exp. ID 33306
Forward primer (5'-3') TCTGTACGTAGGAGGATTAGCAGAGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCAGCTTCAGCCGTTGCCATAG	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 250	Approximate temperature 55°C